G90535


Basic Information

Item Value
gene id G90535
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3713924 ~ 3714846 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134057
GTTTGCCCATATTTATCTGCTGAGTTCGGGTCAGCTCCGTTCGTGAGGACGTCATTCAAAAACTGCAGGTCCACCTGAAAACAAAAGTCGGTATCGCTGCGTGACGCACCGTGTCCTCCCGAAGCTCAGTGGAGCCACGTggttatttttgtgcattacCTCATCTGTGTCTTTATTGCTGTCCGCCAGATCTCGAAAGTGATCCAGAAGCCTTCGATTCAGCTGGATCTCCGTCTTCTTCTGTCCATCTACCGTGTCTTCATCCGTTGCAAGACCCTTGTATTTGCTCCCTACATATTCCTCTAAAAATACAACCATTTAGAGCTCGGACTGACTTTCACGTGTACCGCGTATCTCTATATAATCTTACGATAATCTATAACCAGCGATTATATTCTCGATGCCGAAGGCTGATAGACCATCTATAAACAATCTGCTAGCAATGGTATAATTTACTGTATAGTACAAGCAGACTGTCCTCAGTTAATTCTGCGGTCCTTGAGATTGCTTGCTCACATTTAAATAGTCTGCTGTAGTGTGAGAACGTAAGAACATGCACGGCCATTTGTGACTAGAATGTATGTAGCTTCTGGTGTTATTTGCTTCAGTTTTATTTAGCTATACAAACAACTATCTCTTGTGTTGCTTGATAATGCAAAAtggtgttgttattattatttttattattttaaatgcattattgtaaacatttaGCGTGCACATTCACAGGAAAACATCTTGCATGCACGTCGGAAAATAAGCTGGTTCTGCAGCTCTGTAAGTGTTCCTCTGAACCCCTCCacctccaccagctccacctgtctagatCTGCGACAGGATGGCTCTCAAACGAGCttctctttatttaattttatttctattctttCAAATTAGGTCAAAATACTGTCCCCTGATACCATCGG

Function

GO: NA

KEGG:

id description
ko04713 Circadian entrainment

RNA

RNA id representative length rna type GC content exon number start site end site
TU134057 True 923 lncRNA 0.42 1 3713924 3714846

Neighbor

gene id symbol gene type direction distance location
qkib qki,LOC107696379,LOC107559772 coding downstream 170248 3482958 ~ 3543676 (-)
LOC122356548 qki,LOC107739475,LOC107559772,LOC107696379,LOC107669572 coding downstream 246867 3454742 ~ 3467057 (-)
yipf3 yipf3,LOC107696384 coding downstream 296992 3412331 ~ 3416932 (-)
lrrc73 lrrc73,LOC107728077,LOC107696385 coding downstream 304279 3401937 ~ 3409645 (-)
mea1 mea1,LOC107739467,LOC107696388,LOC107728068,LOC107564221 coding downstream 435543 3276168 ~ 3278381 (-)
prph2b LOC107739477,LOC107586467,LOC107578331,LOC107590000,LOC107669578,LOC107728796,LOC107696376 coding upstream 46987 3761833 ~ 3764601 (-)
LOC122356122 kcng3,LOC107758134,LOC107590001,LOC107756869,LOC107586474,LOC108273984 coding upstream 301187 4016033 ~ 4022400 (-)
haao haao,LOC107586504,LOC107699283,LOC107727361,LOC107590002,LOC107678607,LOC107707146 coding upstream 347626 4062472 ~ 4067606 (-)
LOC122357001 LOC107699293,LOC107586477,LOC107727368,LOC107678540,LOC107707148 coding upstream 526681 4241527 ~ 4244433 (-)
thada thada,LOC107586496,LOC107590015,LOC107707143,LOC107727367,LOC107590014 coding upstream 530885 4245731 ~ 4325475 (-)
G90533 NA non-coding downstream 1385 3711396 ~ 3712539 (-)
LOC122356977 NA non-coding downstream 135188 3568616 ~ 3578736 (-)
G90505 NA non-coding downstream 262511 3450994 ~ 3451413 (-)
G90504 NA non-coding downstream 263191 3450424 ~ 3450733 (-)
G90482 NA non-coding downstream 312858 3370165 ~ 3401066 (-)
G90622 NA non-coding upstream 214433 3929279 ~ 3930527 (-)
G90623 NA non-coding upstream 215970 3930816 ~ 3931096 (-)
G90624 NA non-coding upstream 216858 3931704 ~ 3932834 (-)
G90625 NA non-coding upstream 218709 3933555 ~ 3933766 (-)
G90626 NA non-coding upstream 219367 3934213 ~ 3934450 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 278344 3422753 ~ 3435580 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other downstream 415375 3281337 ~ 3298549 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 469028 2990418 ~ 3244896 (-)
G90311 polh other downstream 1086767 2626328 ~ 2627157 (-)
G90304 NA other downstream 1128593 2584196 ~ 2585331 (-)
wu:fj16a03 NA other upstream 236917 3951763 ~ 3955955 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other upstream 337897 4052743 ~ 4055413 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 958120 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 976036 4690882 ~ 4779732 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 2205656 5920502 ~ 5926677 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G89650 NA non-coding CI01000015 null 4054473 ~ 4054679 (+)