G90571


Basic Information

Item Value
gene id G90571
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3872759 ~ 3894955 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134099
ccgaatgtgtaacttgcaagtgacgtcgcttcagttgcaagggaagcaaactgtttccagctctcttcagtttgcttctgaaacgcagcccctcacacatctttatttatacataaagaaaaagccacccccataaaaaggttacaatagggcacattcctttcttgtggGTGCTTGATCCTGATTAGATATCATTTAGGCGGAATCTGCTTGGGGGTGAGTTCAGCAAGAGTTCATCAAGGTGTCGGCTCTGGACAGTGTCCTGTCCTTTGTGAGCGTGTtgctctttacacacacacacacacacacacacacacagaagttcttcaaaaccatattgatatatgagacaataatgtcaataaaagtacgaaacaagaatagtagttccaaca
>TU134100
ccgaatgtgtaacttgcaagtgacgtcgcttcagttgcaagggaagcaaactgtttccagctctcttcagtttgcttctgaaacgcagcccctcacacatctttatttatacataaagaaaaagccacccccataaaaaggttacaatagggcacattcctttcttgtggGTGCTTGATCCTGATTAGATATCATTTAGGCGGAATCTGCTTGGGGGTGAGTTCAGCAAGAGTTCATCAAGGTGTCGGCTCTGGACAGTGTCCTGTCCTTTGTGAGCGTGTtgctctttacacacacacacacacacacacacagaagttcttcaaaaccatattgatatatgagacaataatgtcaataaaagtacgaaacaagaatactgtgtgtctgtg

Function

NR:

description
MAGUK p55 subfamily member 6 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134099 True 395 lncRNA 0.43 2 3872759 3877501
TU134100 False 392 lncRNA 0.43 3 3872759 3894955

Neighbor

gene id symbol gene type direction distance location
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 113624 3729913 ~ 3759135 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding upstream 143291 3717296 ~ 3729468 (+)
LOC122356793 LOC107669554,LOC107696371,LOC107578696 coding upstream 155465 3713833 ~ 3717294 (+)
LOC122356604 LOC107739472,LOC107565599,LOC107669574 coding upstream 432445 3434523 ~ 3440314 (+)
ncoa4 LOC107739471,LOC107669570,LOC107696383,LOC107728073 coding upstream 446023 3417534 ~ 3426736 (+)
trnai-uau_4 NA coding downstream 176851 4071806 ~ 4071899 (+)
plekhh2 LOC107678558,LOC107707149,LOC107699295,LOC107586497,LOC107590017,LOC107727353 coding downstream 430683 4325638 ~ 4348853 (+)
LOC122356796 NA coding downstream 465580 4360535 ~ 4362542 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding downstream 469068 4364023 ~ 4373553 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding downstream 478259 4373214 ~ 4377830 (+)
G90564 NA non-coding upstream 17216 3852210 ~ 3855543 (+)
G90514 NA non-coding upstream 303267 3569068 ~ 3569492 (+)
G90388 NA non-coding upstream 329107 3502068 ~ 3543652 (+)
G90381 NA non-coding upstream 382968 3469447 ~ 3489791 (+)
G90378 NA non-coding upstream 422274 3450173 ~ 3450485 (+)
G90573 NA non-coding downstream 57645 3952600 ~ 4049612 (+)
G90579 LOC107586473,LOC107758132,LOC107666233 non-coding downstream 97553 3992508 ~ 4013116 (+)
G90646 LOC107707147,LOC108422651 non-coding downstream 162305 4057260 ~ 4062779 (+)
G90650 NA non-coding downstream 210292 4105247 ~ 4105471 (+)
LOC122356176 NA non-coding downstream 242362 4137317 ~ 4142502 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 40209 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 158996 3620406 ~ 3713763 (+)
G90377 NA other upstream 422742 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 591762 3277837 ~ 3280997 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other upstream 598387 3271325 ~ 3274372 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other downstream 287544 4182499 ~ 4353931 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 666693 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 1097198 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 1282763 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 1366081 5261036 ~ 5271247 (+)

Expression


Co-expression Network