G90579 (LOC107586473,LOC107758132,LOC107666233)


Basic Information

Item Value
gene id G90579
gene name LOC107586473,LOC107758132,LOC107666233
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3992508 ~ 4013116 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134114
ttttttttttttttttttttttTTTGTTCactttttacaaacaaaatagaTTTATTCTGCCAGGTACACATCGCAAGGACATCATTTACAGGCTCTCTGTCATTCACTCAAAAGATACAATCTGTTCATCAACGTGTGCATCACTTCGATATCTCTGATTGTTAAAACCAGACCGTTAAGAGAAACAACTGCCTGGAAAGAATGAGCATGTGAGGAGATGATGATTGACCACGCTGTAATAAACGGACATATGCAATGAAATCAGATTGATGGAGATGTATTTGTGTAACCAGTGAGTGAGATCTAAATACTGGGGTAAATCAAATAATTCGGTCACATTCTTTTTAGAGCAAAATGACAAAAGTCCaaccaaaataattacaatatatttgaTAATTACAAAGGGAAGGTGAAGGGCAGGTCACTGTGGTTTTCGGGGCTGGGCAGCGATATAGAGCGCCATTAAACAGTAGAGGGTGCCGCCAATCGTCAAGCCCATCGTGGTCCTATACAACATTTTGTCCATGACTCCACGCTTCAGGTGAACCGGGCTCCATCACCTTTGGAAAAGCTTCTGCAGATCAGGGATTTTGTTGATTCCCATGTAGTGAACCACTGACTCGGTCTCAGATACGAGCTTGGTCGGTAAAGCAAAGACCATAGGAGGAGCTTGAGAGGGAACCGTGGGCCTCAGCCCCTGTCAGGACAAACACAATGACATAGATGACATTAGGGCACACACAAATGACTACCaccattatttatgcattttaataataatccagACCCCTATGCTGGCACTGTCCTCTTCTGAACTCAAAAGGACACAAATACC

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 7A-related protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134114 True 835 lncRNA 0.41 3 3992508 4013116

Neighbor

gene id symbol gene type direction distance location
LOC122356299 eml4,LOC107586470 coding upstream 43553 3881586 ~ 3948955 (+)
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 233373 3729913 ~ 3759135 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding upstream 263040 3717296 ~ 3729468 (+)
LOC122356793 LOC107669554,LOC107696371,LOC107578696 coding upstream 275214 3713833 ~ 3717294 (+)
LOC122356604 LOC107739472,LOC107565599,LOC107669574 coding upstream 552194 3434523 ~ 3440314 (+)
trnai-uau_4 NA coding downstream 58690 4071806 ~ 4071899 (+)
plekhh2 LOC107678558,LOC107707149,LOC107699295,LOC107586497,LOC107590017,LOC107727353 coding downstream 312522 4325638 ~ 4348853 (+)
LOC122356796 NA coding downstream 347419 4360535 ~ 4362542 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding downstream 350907 4364023 ~ 4373553 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding downstream 360098 4373214 ~ 4377830 (+)
G90571 NA non-coding upstream 97553 3872759 ~ 3894955 (+)
G90564 NA non-coding upstream 136965 3852210 ~ 3855543 (+)
G90514 NA non-coding upstream 423016 3569068 ~ 3569492 (+)
G90388 NA non-coding upstream 448856 3502068 ~ 3543652 (+)
G90381 NA non-coding upstream 502717 3469447 ~ 3489791 (+)
G90646 LOC107707147,LOC108422651 non-coding downstream 44144 4057260 ~ 4062779 (+)
G90650 NA non-coding downstream 92131 4105247 ~ 4105471 (+)
LOC122356176 NA non-coding downstream 124201 4137317 ~ 4142502 (+)
LOC122357002 NA non-coding downstream 231492 4244608 ~ 4245790 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding downstream 446523 4459639 ~ 4465868 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 159958 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 278745 3620406 ~ 3713763 (+)
G90377 NA other upstream 542491 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 711511 3277837 ~ 3280997 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other upstream 718136 3271325 ~ 3274372 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other downstream 169383 4182499 ~ 4353931 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 548532 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 979037 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 1164602 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 1247920 5261036 ~ 5271247 (+)

Expression


Co-expression Network