G90659 (socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402)


Basic Information

Item Value
gene id G90659
gene name socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4459639 ~ 4465868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134231
GATGATATCTATTTACTGCATGGAATACactcaatattttattaataatattaagacAACGAAGCATTCACAAAGCACCAAGAGTGACATCTACAAGTGCATTGGCTGTAACAAGAACAGGTTATGcaaagaataaaacaacagagtGAGAAAATATTCAGAGgacgaacaaaacaaaaacacatctttcACCCAGATATTAGTTCGTAAAATGAGAAGGTAACAGAACAATATTTGGTGATATACTTTAGGATTAGAGATCGGTTAGTCTGTGGCAGCTGAGAAGGCTGTTGTGATTGGTCAGAATGTATAAGGCGGTCGAGGAGGCAGAATGACAACCATTAGCCCCCATCATCGTCAAGCCACGTCCCTACGGCGTCCACATACATACCGCTACAAGCGTGCACGTATAGCATTAAAGTGACATAAGATTGCAACCATGGTTACATCACACTCAATGTGTATTAGAGATacagtttatgtaaaaataattcgTTAAATGCTACTTTGCTTGCATAAAACTATTAAACTCCTTTCGCAACATTTTGGCACCAAAGTCGAAAAGATCAGAGGCCTCGTTTATAAAAACCCATGTAAGTTCGGATTTAATCCTAAAGTCCGTGGATTTGATCCGGCGTAGAAACAAATTGGGATTTACGAAAGCTAAAACTGTCACGGCAGCATGCTTGTACATAAACCAAGCGAACGGAGTAAATAAATGACCGCATTTACATTAACCATCAATTAGGATAATCCAAGTTTTGTTGCAATGAGTGAGGGAAAATAAAAACGCTTCATGCAATTATCATATTTAGGACTATTATACGCATGTTTAATAAATGAGGCCCCAGAGCTTTAAACGTTGGCACTAAAGTAGAGCTAAAAAAGAGTTACGATCTAAACAGAAGGATTAGTAAATTCAAGATCAATCGCTGCCCTGCCACAGTCTGTAGCATAAAGTCCACTCTATATAAATCTCTACATTTAACAATTAAGGGTACACGAGTATGCGTGCATGTATCAGTTTTCTGTTTTGTCTTGGGGGTTTTTCATCGGCTAGTTTGCAAGCAGGGTGTACTTGACATGGTCATACGGTCAGTATGTGCTACGGTGGCTGACATAAGAAATTTCCCATGGGGAAAAAGGGCAGAAAGAACATCCGACTCCTCCATATAGAGAAGCGGTTTCAAAACGATCAAGTTGTCAACCACGAAAACAAGGACAAAGCATCCCCAGGCCATAAGCACAAGACACAGCTCATAGAATTCTCAAAACAAGACTCCTCACTGTAATCTTTGTTGACTTCTGCAGTCCCACCGTTAccgttttaaatgcaataaaccaGGCCTGAGTTACTGGAGAACGCTGTGTTGGATTAGTTTGGTGTGTTACTTCCCACCCACCCCCCCGTAATACTTTCTCTAAACTATTAACTAAATAACGGCTGTGGTTTCAAACACAGCCCCGTTCCTTGCAGCACTCAATGTTCCTCAATGGAGCACTGTGTGCGTTAGCCTCTTGCTAATGCTAACTTTAGCTAGTATCCAGACTAGATAAACAACACGCTCACTGCTTTCAGCACTACATATCCAAGAAAGAGGGTGATGCTGAGGATGTGGTCAGACCggggaggaagaggaaaaaTTTGAGCAAAAAGTCCCTCTCTTGTCTATTTTCATAGCTCCCATCAAGAAACACAGAGTGGTCCTTTTAGCAGGTGGTAAATTTAGAGGCTAGCACATTAAATTTAGCCTGTGATTAGTGCCTGTAAAGCAGGGCAGGGTGTAACTCTGCCAGGAGAGACTCGCTCGCTGTGCAGTGGCATACAAAGTCCCAAATGACTGCATGAGTATGCCtcagtgtttaaaaaagaatCCAAAGGATTTGGTGAGGACCAGGCTATCGCTAAGCGTTTAACACCCCTCGAACCAACAACCTTGAAAATTAAGCTTTCTGTCATAAATGCAGAGGCTTAAATCATCCGAACTCCTTCCTGAAACAGGAAATAGCTTCACGAATTTCTGCTGAATGCCTTCAGCATCGTTGATATTTTGCTATAGGGTTTCCTGGGGTTACTGGTATGtgcatttctttacaaaaacatactgtGGCGGTACCAGGTTACGGTAGTATCATGGAAGAACCATGGTACATGTTCTAAAAACATGGCACGTGTAAAAACCCCATGACGTTACCATGTTaccaaatcaaaaaaaaaaaaaaaaaaaaaaaaaagatactttaaAACATTGACAACAAAAAATGAGTACACATAATAGTTAAACCAGAGTAAGCTGGTCTTCAATTGGTGTAAACCCTGAAGAccaactaatatatatatatatatatatatatatatataatatgtggatCGGGGAGAGGTTGTGAAACTGCCTGCTGTGTCCAAGTGCCCctattttgtctttaaattcaATGAAAGGCATATTATTCTCAAAGCTGAGGTCGTGAAAGCAGATGACATCATCTGACGTTTACCGCTACACAGTTGACATAATGTGTGCCTGTATACAGAGCATACAGTGTGCAGggtggaagaaattttaagatGGTTATTTTGCGTATTTATTCAGGCCATTCAAGTGGAAAAAtagagttattaaaaaaaattctaaaattaacaaaatgacTTCCTTTCAGTGACAACCGAAGTGTATTTTAAAAGAGTTAATTGCGGATTTAATTGCAGTTCAAATAAATGGCTTCAAAATGGGTGCTACTCTGCCAGAAAACTGGACACTATAATTAAGTCATTGAgctcaataaaaataatcaaaaggcATGGTGGAAGATTTCTCATTCACAATAACAACCTACAGAGATGCACACCTTTGGTCGCTGATCATCAAACACCCAAATACTGCAAATTGTaccatttttacatattattatgcATGGTCTGAGATTTGCTTGGACCTTGAAAGTCTATTGCAATACCGAACATATGATAAAAAACATATTAGCGTGATTctgttgactttttttctgtgtgtgtgtgtgtaagaccAAGCACATCATAAGTATAGAATTTTATAACTAAATCTTTACAGTGTTGAGGGAATCTCGATCCCTAGTGCACACGATTATGATGAAAGAAGCACAGCTGCATGCTTCATAATGAATAAAAGTGCAACATTATCAAGTGGAACCAATCACACGTTATACCATCAATCAAtccaataaacattaaatatatacgcAGTGATGGCATCTGTCTGGTTTTCAACAATATCTAAAGTGAAAAGTCCGATCTTAGAGGTATCTATACAAATTTTACAGAAGACTTTCTCTGTCCACTTTCGGCTGTTGCGTATATAACCGTTTAAGTACATACCATATGCACAAGCAAGGTAAGAGACACTAACACAAACTTCGGGTGACTCATGCGGAGAATATGGGGGATAAATTGACATCCAATGAATAaggtacatattttaaaaaatactaaacaaaaaaaaactacaatctTTTTATATGCATGTACTTGAGTCTATAAGTCATTGTGCGGTACacaaacaacaatttaaagtgcCATATGCCATTTTAGACTGTCACtggtaaaaatagaaaattgtaaaatagattgtttaaaacaaagattatgCTGGGATATGACACTACGTGAGAGcctagttttaaataatttgtccTCTCTATCATATGGCACATGGTGCGCTGTCCTCCCTCCTCCCCGCAATTAATTCATGCCTTTCACTTCTGTCTGCCtcgattttaaaaataaagcatgcttAGTGCTGAGAGGTGCGTGTATAACTGTGATCCTGTCCATGTACACAAGGCTTAACAAGTGCTGCCTCTGAGAACTTGACACTTGTAGGAGGTCACTGTAGAAGGTATTGCTGATACATTAGCCGTGACTTAGCAAATAGGCATATAGTTTAGGTGACTAGATATTTAacaccacatttttttttttttttttttttttttgttaagagTAGCAGATATTCAGGTATGTAGACTTCCAAGAttacttgaatatattttatcgCTGGATCTTCTGTTGATCCATTTGCCTGACAAAAGATGCTAGTAAATGTGGCAACACTCAGTTTTACTGCTCAAAATAGTTTAAAACGCTAAAAAGATAGAATGCAGAGGGCATGCGGGAAGGCTAGGGGAGATCCAGAGGATTTAAGGTCATAGGGAAAAGAGCAGAGGGAATAAGACCATCTCATTCCCAGCATGCTCGACACTTTAGCGGTTAAACTAGCTTGACAGAATGTACTGCACTGAAACATATGTATGGATTCCATGTGTAGTAATAACCggaaaaaaaactgctggaAGTTCTCAACATCCTCTGTTGCTGTGTATCTAAAGCCAGCTGTATGATGGATAATATAAGCCACATACTCCTCTGGAGGCAAAACTCTTGCCCACAGTCCTGCCTCTCTTGGGCGCAGAGCCAGACCTCATTTGACCTTGAGTGGAGGCTCTCTCTCTAACCAGCGCACACGGACTTTCTGTTTGTAGTGATACTCCTTCAGGAAGTCCTGCATGGTTGGAGGCAGTGGCAGGGCACCAATGCCATCGTAGGTGGTGTGTCTGCAGATGGCAGCTCGTGCCAGGTGCTGAAGGCTGAAAGGGAAAGTCCGGTGTAAGGGAGCAGTGAGCAGGGGCTCAAAGAACATACAGGCACTGGGGTCTTTATAGTGCTCCAGCAGGCCTGTTACTGTGGAAGAATGGAAGACACAGGGGTCATGCGCATCGAAACTGAAGTTATGATTCCATTGTTCAATGCGTGCATGCAGTGAACGATTGTAACGCCGAAAGCTAACAGAAAACAAGTAGTCCTCCTGTGCAGAATCACGTAGCAGGAAGGTGCCCTCTGGTCGTCCATCCAGCAGTGCTTCTGCTTGGTACCGGTCCATCACCCCCCAATAACAAGGAAGTGCAGTAATGGCCTGTAGGTCAGGCACCAAACAATGAATATAGTCAATCTGCGTGTGGACTTTCCAAGGCCCCGGCTGTCTGGAGCAGTGAGCATCCCCAGAAGCATGCCTCTGCTTGGGCCTCCGTGTCTGTAGGCAAAGAGTAGTTGAGTCCTCTTCAGAGTCACAGTCAACAGTGTGGGATGGCACTGCCATACTAGCTGCAACCTGTGCGGCAATCCCTGATAAACCCCCAGAAATAGAGGAGACTGTTCCCAGACTTCTGCTTTCCCCAAGTCCTTCCCCAACACCAGGGGCCATCTTTGGTCCCAGTTTATAGAGGGAGGAGTTCTGTGAAGTTGCTTCCAGCGTATGGATTTGTGCATTCGGAGGGGGATCAACTCCTTCCTCTATGCTAAGTCTACGCCGTTCACGCAGCCTCTCCTCCTCGTCCTCAGGGGATGGATGTGCCGAATCAAATGCATCCAAAAGAGCAGTTGAGGAATGCGGGCTGACTGGTGCTGTATGTTGCTTAATTAGGTGCCACTTGTTGGCCAAATCGGATCCAGGTGGGAAAGGGCATGTTTCAAGCATGAGTTCAGTAAGGTGGATCTTACGTTTGGAGGACACCTGGCCTTTAGCTGACTGAGAGCGGCGGTGTGTGGGAAGAGGAAGGCACAAGCCTACGGTGTCCCGAAGTCGCTGTCGTAGAGAACGGGTGCTAAGACTCCGCCCACTGCTGCCGGCTCCTACAGAATCATTAATCTCCTGGATAGAGCTAACTCCATAGCGACGATCCCTCCTAGCTGTACTTCCTCTAGAGCGTCCCGTTCGCCTATCAGCCTCAAGAGAACTTTGTGTTTTAGTTGAGCAAGAATGCTTCTTTTTACCTCCCAAGGGAGCATGACGCGAGTAAGAGTCCCTACGGACAAGGGGACCCCTCCGTGCATCCTCACTGTCTTTGTCAATAGAGATTTCTACTATCTGGGGTATATCTGCCACACAGTTATGTCCTCTGCGTCCTCCAGAAACCAGTGGGAGTGGTGACAAGGTCCGTGATGGTGTGGAAGATCTAGTTTCATAGGGTTCTGCATGTGCTCCCCTGCCCAAGTCCTCCACACAGTGGACGCAATCTAATTCCTGGCTACACAGATGGGACTCTGAGCCATCGTTGTGGAAGAGAGCTTGGCATCGACTCCTGAGGTTACCCCACATCTTGCCCACTTTCTCCATAGAATGGAGAC

Function

symbol description
socs5b Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within several processes, including cell surface receptor signaling pathway; intracellular signal transduction; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS5 (suppressor of cytokine signaling 5).
socs5 Enables receptor tyrosine kinase binding activity. Involved in negative regulation of epidermal growth factor-activated receptor activity and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of phosphatidylinositol 3-kinase complex.

NR:

description
PREDICTED: suppressor of cytokine signaling 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134231 True 6157 lncRNA 0.42 2 4459639 4465868

Neighbor

gene id symbol gene type direction distance location
mcfd2 mcfd2,LOC107727380,LOC107699287 coding upstream 18569 4438451 ~ 4441070 (+)
stpg4 LOC107590019,LOC107678571,LOC107708399 coding upstream 58806 4392893 ~ 4400833 (+)
calm2a calm1,LOC107396020,LOC102778633,LOC102293206 coding upstream 68442 4387181 ~ 4391197 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding upstream 81809 4373214 ~ 4377830 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding upstream 86086 4364023 ~ 4373553 (+)
prkceb prkceb,LOC107727364,LOC107699301,LOC107708403,LOC108422423,LOC108263296 coding downstream 8552 4474420 ~ 4547509 (+)
epas1b LOC107727363,LOC107586486,LOC107699276,LOC107708405 coding downstream 83232 4549100 ~ 4583499 (+)
dhx57 dhx57,LOC107727356,LOC107708406,LOC107678533,LOC107699277 coding downstream 129780 4595648 ~ 4607089 (+)
atl2 atl2,LOC107586488,LOC107699303,LOC107589558,LOC107708410,LOC107727384,LOC107678587 coding downstream 146774 4612642 ~ 4622799 (+)
si:ch211-250c4.3 LOC107699306,LOC107589555,LOC107727387,LOC107708411,LOC107678604,LOC100535981 coding downstream 177244 4643112 ~ 4669016 (+)
LOC122357002 NA non-coding upstream 213849 4244608 ~ 4245790 (+)
LOC122356176 NA non-coding upstream 317137 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 354168 4105247 ~ 4105471 (+)
G90646 LOC107707147,LOC108422651 non-coding upstream 396860 4057260 ~ 4062779 (+)
G90573 NA non-coding upstream 410027 3952600 ~ 4049612 (+)
G90700 NA non-coding downstream 5197 4471065 ~ 4471744 (+)
G90888 NA non-coding downstream 498834 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 537542 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 569491 5035359 ~ 5036116 (+)
G90957 NA non-coding downstream 931627 5397495 ~ 5435571 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 105708 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 627089 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 745876 3620406 ~ 3713763 (+)
G90377 NA other upstream 1009622 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 1178642 3277837 ~ 3280997 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 95780 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 526285 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 711850 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 795168 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1485349 5951217 ~ 5952517 (+)

Expression


Co-expression Network