G90660 (epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711)


Basic Information

Item Value
gene id G90660
gene name epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4182499 ~ 4353931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134238
CTCCACAGGCTCACACTTGATGTTCTTGTCTCCCTTGTCACTTCTGCGCACACCGGCACTGTTGACGCACCAGCACACGTCAGTGCCGTTACACTGGACAGCCTTGAACTTGCCGTTACTCTCACACTCCGGGTCATAGATGCCATCGTTGTCAACAAAGGCAGTTTCTACCGGCTTCCCACCAATTGATCTTGTGGACAGGTTGTTTTTGGCGCGATACATCTCTGCTTTCATGAGGTAGCACTTGGGAATTACTGCGAGTAGAGAGAAAGTTCACACTTGATGGGAGGAACAGAGCACCTTTAACAGCTAGTTTAGGCGGAGCTACCAGAACTACTAAAAAGCAGACTGGGAGACAAGTTAAACCAGCTTGGACTTTTGAAAACGCAAGGATACCAAAAACTactagagagagaaaaaaaaaaaagccccacTCACATTTTGAACAATCAAGCGTTTGACTGACTCCAGAAAACTGAAGGGAGCACTTGCATGGATCTCCATCGCATTTGGCCCATTTCATGTTGTTACAAGAGCCTGTtggattcaaaaaaaaaaaaaaaaaaaaaaaaattgaagtgCATAACCCAGTGCAAGTAGATTTCCCCcacccccaacacacacacacaaccacaccCTGGATCTCATTGTTTGGTTTGCCTCCTAACTACCAATTTAACGACTAAGATTAAACATTCAGTTTAACTCGATTTAGTTTACTTTTACACATCATCCGttcaaacatttagttttaattggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaagttgttacttACATTGTGAAGCGACCACTTCCACCAACACCGCAACCATCAACGCGACTAAAATCTTCATCTTGGCTTTAGAGAgaactgaaaaacaacaaacaaataaagtcaCTCTGCGCGAGGAGCTGGCGCGTGCGTTAATCGCCACAGCCTCCTTTCTAGCTAGTCTTCAAACAACAAAACGCTTCTTACCAAAGCTTTAAGAAAAACTAGAAATCCGACCAAAAAGTTATTCCGCTTGTTGATAAGACTTGGACGCAACAACGAATAAATCCTCCAGATATCCTCTCCCTTCACCGCCACACGACTGATCTTTTTTTTTCCGGCCAGACCATGTATGGCCACTTGACGCATCGAGAGTGAATCTccattttggaaatgtaaagcACCGACAAGATTTTCGGTTGAAACTCAAAACATGCAACTCTG
>TU134239
tgagagagagagagagagagagagagagagagagagagagagagagagagagcttcaAACTGCACGAACCAATCGAAACCACTGGGTGGCGTCGCGAGACTGGATCAAACTTTTGGAATGGATGCGCATACTTTGAAAACTAGTATACTTTTCGTCAAGGCATATTCTTGGCAAGGATGAAGGAAAATCTGAAACCGCTCTGTCTTTCGCGTTCACGAGtcttttgtacaaaaaaaaaatctggaaagtAGGTGGTCCAAAAAGACCAAGAGAATGCACCAAACTGCACCGGTGGAATGCCTTCAAACAGACTAATGCCATGTCGAGCGTCtgacaaaaacaaatccatctcCCTcgatattcaaaaaaaaaaaaaagtctattgcTCGACTACATATCTAACGGGAGACTCCTCCGCTACCGAGTCCACTACAACGAGAAAAGTTCCGCTCAATCGTCGGAAATCGACAGCCTGCTGAAGATCGGCAAACGCCTCCCGCCGTCCAGGCTGGGAGACTCGGAGCCGCTGAGACTTCCGGTGGAGCTGCGCGAGCCGCTGGCGTAGCTGTCCCGGTCGGAGATGCTGTCGGGCGGGCTGGGGGGCGAGTCGAACACCGGCGACTCTGACAGGCGCTGGAGGGACTGCGTGTGGCCGAGGCCGTCGCCCATGTTGACCTGAAGGTTTGCGTAATAACCGTTCTGCGTGTGCACGGCCAGCGGCGCGAGCAGGGCTTTGAGGTCTTGGCCGGTGAAGGAGAAGGCACTGTTTCCGAGGCACCGGGCGTCTTCGTAGAAGCTCGCGGCGCTGGAGGGAGGCGGGGTGCGCGACGTGGGGCTCTCGAGAAGGGGCGAGTCGAGTccgtggtggtggtggtggctGGAGAAACCGGAGAAGCTGAGGCTGTGGTGGAGTTTCGGTcggtgctgctgctgctgctgctgttgctgtccGTAGCCGCTCACCGACTCGCACCGAGCGGGCTTGGCGGACTCCCCCTGCACGCTGTTGGCGTTGCTCGGCGCCGGTCTGCGCTCGTCGGCGTTGTGGATGAAATGGCACCGCGGGCCGTACGGGCAGAAGCCGATGGTGTGGAAAGTGCGACAGGGCTCGGTTTTGTACTTGGGGTGGCGAGACAGGCTTCTCAGCTCGTGGTAGCCGTGCGCAAACTGGCACTTCTCGCCGTATTTGCAAGCGCCGTTTTCCTCGAAGGGCCTGCAGAGCTCCGTCTTGTAGCGGGTGGAGTTGATCTGCGAGCCCGGCTTCTGCTGCAGCTGCTGGGCGCTCTCGCTGTAGGCGCGGTCGCGGAACTTGTTCTCCTTGTTCATGATGGCGTTCTCCttcatgctgctgctgctgctgctgtaggGGCTGGCGGGGTACTTGTTGCCGTTTGTCACGGACTCCATGTTGCTGGTAGAGTTTCGACGGAAGAATCCCGACGCGTACGAGTTGCAGTTGTTGGTGCCGCTGCCGCTGGAGGTTGTCACCGGGGCCCCGACTGCTTTCTTATCCAGCATGCTGTTGATGTGAATGGCGTTCATGTTGAGGCT
>TU134242
ttttttttttttttttttttttttccaaaattattttattgggagaactacaaaaaaaaaaatgtacagtacaaaGTTAACAGTCTCACACGCAAACTTGTAGTGAACCGACTccccgaaaaaaaaaacatatgttacAAATCCcgttctttttgtcttttttttttttattacattcaaaaagCTTTACTTCTGATAAAGTAGTCAAAAAAAAGGTACATAGTGCGAACCCCCTGTACCTGCTATGTACAAACTAAACGTGTTCAAACTCTGTCCCCGTCCAGCAAGTCTGGAAGATTCAGACCATTACCATATCATAGGAAAAAGCAAGAGAACAAaccaaaaaggcaaaacaatGCAAGGAATAGGgagtaataaaacaacaacaactgggATCGTTGCTCTAAGCCTCTATTTCTCTCCTTTGATAAGTGGTAACAACCTTCCAAGAAGTTTAAATTACAAACTACATTCATTTCCTCTTGTTGTAAAACAATAACATGTACGAAAATACTTTATTTGGTTAATCATAaggcaatgtaaaaaaaatggtgaaTCCCCACACAGGCACTAGGCAGTAATACTGGGGCTCTGGTCTGCTACATTCTCACGCACGTGGCTGCCGTGCATCGTATAGATATAtacgcataaaaaaaataataataaaatactttttggttAATCGATTTACTTGGGATCTTTGAAGTCTGATTTCCGTGACGTTTTAAGGCTAGTACATGTGTTCGGACGGTCCTCTGCCAACCACAGTTTATACATTCTACAGACAAACCTAAAGGGACGCGTCTGACgattaaaagaatgaaaaaaaaacacgaaaaaaaccaaaaaaaaaaacacaccttcTGAAAAGTAACATCCCAACAAACAGCAAATCAcacaaactgtttttaatgaacgtaaacaaggaaacaaaattaatgaaataaatatcacataCAATCtcttaaattaagatttttttttaactcatttacaataaaataaagtgaagttacaaaaaaaaaaaaaaaaaaaaagagaccaaacgaggaaaaaaaatatatatattactgtgaaAAGAACATACACTCCACTTTAATGTAGATTAATAATGGCGATcataatttaaacataataaaagaatatagaTCTATTGCTTCATCATACTCGATAAATACAGTATGGACACAATTAACAATGTAGCCTATACTTTTcacaagataaaaataaataagttaaatagtTCATAGCCGGTTAAGCACCGCTATGTAAATCACTCGTATcgactataaaaaaaatagatatattcaACCATCAGCAGTGATTTCCCCGACGAGccaaacgagagagagagagagagagagagagagagagagagagagagagagagcttcaAACTGCACGAACCAATCGAAACCACTGGGTGGCGTCGCGAGACTGGATCAAACTTTTGGAATGGATGCGCATACTTTGAAAACTAGTATACTTTTCGTCAAGGCATATTCTTGGCAAGGATGAAGGAAAATCTGAAACCGCTCTGTCTTTCGCGTTCACGAGtcttttgtacaaaaaaaaaatctggaaagtAGGTGGTCCAAAAAGACCAAGAGAATGCACCAAACTGCACCGGTGGAATGCCTTCAAACAGACTAATGCCATGTCGAGCGTCtgacaaaaacaaatccatctcCCTcgatattcaaaaaaaaaaaaaagtctattgcTCGACTACATATCTAACGGGAGACTCCTCCGCTACCGAGTCCACTACAACGAGAAAAGTTCCGCTCAATCGTCGGAAATCGACAGCCTGCTGAAGATCGGCAAACGCCTCCCGCCGTCCAGGCTGGGAGACTCGGAGCCGCTGAGACTTCCGGTGGAGCTGCGCGAGCCGCTGGCGTAGCTGTCCCGGTCGGAGATGCTGTCGGGCGGGCTGGGGGGCGAGTCGAACACCGGCGACTCTGACAGGCGCTGGAGGGACTGCGTGTGGCCGAGGCCGTCGCCCATGTTGACCTGAAGGTTTGCGTAATAACCGTTCTGCGTGTGCACGGCCAGCGGCGCGAGCAGGGCTTTGAGGTCTTGGCCGGTGAAGGAGAAGGCACTGTTTCCGAGGCACCGGGCGTCTTCGTAGAAGCTCGCGGCGCTGGAGGGAGGCGGGGTGCGCGACGTGGGGCTCTCGAGAAGGGGCGAGTCGAGTccgtggtggtggtggtggctGGAGAAACCGGAGAAGCTGAGGCTGTGGTGGAGTTTCGGTcggtgctgctgctgctgctgctgttgctgtccGTAGCCGCTCACCGACTCGCACCGAGCGGGCTTGGCGGACTCCCCCTGCACGCTGTTGGCGTTGCTCGGCGCCGGTCTGCGCTCGTCGGCGTTGTGGATGAAATGGCACCGCGGGCCGTACGGGCAGAAGCCGATGGTGTGGAAAGTGCGACAGGGCTCGGTTTTGTACTTGGGGTGGCGAGACAGGCTTCTCAGCTCGTGGTAGCCGTGCGCAAACTGGCACTTCTCGCCGTATTTGCAAGCGCCGTTTTCCTCGAAGGGCCTGCAGAGCTCCGTCTTGTAGCGGGTGGAGTTGATCTGCGAGCCCGGCTTCTGCTGCAGCTGCTGGGCGCTCTCGCTGTAGGCGCGGTCGCGGAACTTGTTCTCCTTGTTCATGATGGCGTTCTCCttcatgctgctgctgctgctgctgtaggGGCTGGCGGGGTACTTGTTGCCGTTTGTCACGGACTCCATGTTGCTGGTAGAGTTTCGACGGAAGAATCCCGACGCGTACGAGTTGCAGTTGTTGGTGCCGCTGCCGCTGGAGGTTGTCACCGGGGCCCCGACTGCTTTCTTATCCAGCATGCTGTTGATGTGAATGGCGTTCATGTTGAGGCT
>TU134244
CTCCACAGGCTCACACTTGATGTTCTTGTCTCCCTTGTCACTTCTGCGCACACCGGCACTGTTGACGCACCAGCACACGTCAGTGCCGTTACACTGGACAGCCTTGAACTTGCCGTTACTCTCACACTCCGGGTCATAGATGCCATCGTTGTCAACAAAGGCAGTTTCTACCGGCTTCCCACCAATTGATCTTGTGGACAGGTTGTTTTTGGCGCGATACATCTCTGCTTTCATGAGGTAGCACTTGGGAATTACTGCGAGTAGAGAGAAAGTTCACACTTGATGGGAGGAACAGAGCACCTTTAACAGCTAGTTTAGGCGGAGCTACCAGAACTACTAAAAAGCAGACTGGGAGACAAGTTAAACCAGCTTGGACTTTTGAAAACGCAAGGATACCAAAAACTactagagagagaaaaaaaaaaaagccccacTCACATTTTGAACAATCAAGCGTTTGACTGACTCCAGAAAACTGAAGGGAGCACTTGCATGGATCTCCATCGCATTTGGCCCATTTCATGTTGTTACAAGAGCCTGTtggattcaaaaaaaaaaaaaaaaaaaaaaaaattgaagtgCATAACCCAGTGCAAGTAGATTTCCCCcacccccaacacacacacacaaccacaccCTGGATCTCATTGTTTGGTTTGCCTCCTAACTACCAATTTAACGACTAAGATTAAACATTCAGTTTAACTCGATTTAGTTTACTTTTACACATCATCCGttcaaacatttagttttaattggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaagttgttacttACATTGTGAAGCGACCACTTCCACCAACACCGCAACCATCAACGCGACTAAAATCTTCATCTTGGCTTTAGAGAgaacAAGCTTTAAGAAAAACTAGAAATCCGACCAAAAAGTTATTCCGCTTGTTGATAAGACTTGGACGCAACAACGAATAAATCCTCCAGATATCCTCTCCCTTCACCGCCACACGACTGATCTAAACGCGCAACAGGTGTCAAATTATGTATACC
>TU134245
tgagagagagagagagagagagagagagagagagagagagagagagagagcttcaAACTGCACGAACCAATCGAAACCACTGGGTGGCGTCGCGAGACTGGATCAAACTTTTGGAATGGATGCGCATACTTTGAAAACTAGTATACTTTTCGTCAAGGCATATTCTTGGCAAGGATGAAGGAAAATCTGAAACCGCTCTGTCTTTCGCGTTCACGAGtcttttgtacaaaaaaaaaatctggaaagtAGGTGGTCCAAAAAGACCAAGAGAATGCACCAAACTGCACCGGTGGAATGCCTTCAAACAGACTAATGCCATGTCGAGCGTCtgacaaaaacaaatccatctcCCTcgatattcaaaaaaaaaaaaaagtctattgcTCGACTACATATCTAACGGGAGACTCCTCCGCTACCGAGTCCACTACAACGAGAAAAGTTCCGCTCAATCGTCGGAAATCGACAGCCTGCTGAAGATCGGCAAACGCCTCCCGCCGTCCAGGCTGGGAGACTCGGAGCCGCTGAGACTTCCGGTGGAGCTGCGCGAGCCGCTGGCGTAGCTGTCCCGGTCGGAGATGCTGTCGGGCGGGCTGGGGGGCGAGTCGAACACCGGCGACTCTGACAGGCGCTGGAGGGACTGCGTGTGGCCGAGGCCGTCGCCCATGTTGACCTGAAGGTTTGCGTAATAACCGTTCTGCGTGTGCACGGCCAGCGGCGCGAGCAGGGCTTTGAGGTCTTGGCCGGTGAAGGAGAAGGCACTGTTTCCGAGGCACCGGGCGTCTTCGTAGAAGCTCGCGGCGCTGGAGGGAGGCGGGGTGCGCGACGTGGGGCTCTCGAGAAGGGGCGAGTCGAGTccgtggtggtggtggtggctGGAGAAACCGGAGAAGCTGAGGCTGTGGTGGAGTTTCGGTcggtgctgctgctgctgctgctgttgctgtccGTAGCCGCTCACCGACTCGCACCGAGCGGGCTTGGCGGACTCCCCCTGCACGCTGTTGGCGTTGCTCGGCGCCGGTCTGCGCTCGTCGGCGTTGTGGATGAAATGGCACCGCGGGCCGTACGGGCAGAAGCCGATGGTGTGGAAAGTGCGACAGGGCTCGGTTTTGTACTTGGGGTGGCGAGACAGGCTTCTCAGCTCGTGGTAGCCGTGCGCAAACTGGCACTTCTCGCCGTATTTGCAAGCGCCGTTTTCCTCGAAGGGCCTGCAGAGCTCCGTCTTGTAGCGGGTGGAGTTGATCTGCGAGCCCGGCTTCTGCTGCAGCTGCTGGGCGCTCTCGCTGTAGGCGCGGTCGCGGAACTTGTTCTCCTTGTTCATGATGGCGTTCTCCttcatgctgctgctgctgctgctgtaggGGCTGGCGGGGTACTTGTTGCCGTTTGTCACGGACTCCATGTTGCTGGTAGAGTTTCGACGGAAGAATCCCGACGCGTACGAGTTGCAGTTGTTGGTGCCGCTGCCGCTGGAGGTTGTCACCGGGGCCCCGACTGCTTTCTTATCCAGCATGCTGTTGATGTGAATGGCGTTCATGTTGAGGCT

Function

symbol description
epcam Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; liver development; and posterior lateral line neuromast primordium migration. Located in basolateral plasma membrane and perinuclear region of cytoplasm. Is expressed in several structures, including digestive system; integument; pectoral fin bud; pronephros; and sensory system. Human ortholog(s) of this gene implicated in congenital diarrhea 5 with tufting enteropathy and hereditary nonpolyposis colorectal cancer type 8. Orthologous to human EPCAM (epithelial cell adhesion molecule).

NR:

description
PREDICTED: zinc finger protein 36, C3H1 type-like 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134238 False 1222 lncRNA 0.42 2 4352619 4353931
TU134239 False 1551 TUCP 0.58 2 4182499 4244041
TU134242 True 2889 TUCP 0.46 2 4241132 4244041
TU134244 False 1030 lncRNA 0.42 2 4352619 4353757
TU134245 False 1549 TUCP 0.58 2 4182499 4244041

Neighbor

gene id symbol gene type direction distance location
trnai-uau_4 NA coding upstream 110600 4071806 ~ 4071899 (+)
LOC122356299 eml4,LOC107586470 coding upstream 233544 3881586 ~ 3948955 (+)
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 423364 3729913 ~ 3759135 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding upstream 453031 3717296 ~ 3729468 (+)
LOC122356793 LOC107669554,LOC107696371,LOC107578696 coding upstream 465205 3713833 ~ 3717294 (+)
LOC122356796 NA coding downstream 6604 4360535 ~ 4362542 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding downstream 10092 4364023 ~ 4373553 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding downstream 19283 4373214 ~ 4377830 (+)
calm2a calm1,LOC107396020,LOC102778633,LOC102293206 coding downstream 33250 4387181 ~ 4391197 (+)
stpg4 LOC107590019,LOC107678571,LOC107708399 coding downstream 38962 4392893 ~ 4400833 (+)
LOC122356176 NA non-coding upstream 39997 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 77028 4105247 ~ 4105471 (+)
G90646 LOC107707147,LOC108422651 non-coding upstream 119720 4057260 ~ 4062779 (+)
G90573 NA non-coding upstream 132887 3952600 ~ 4049612 (+)
G90579 LOC107586473,LOC107758132,LOC107666233 non-coding upstream 169383 3992508 ~ 4013116 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding downstream 105708 4459639 ~ 4465868 (+)
G90700 NA non-coding downstream 117134 4471065 ~ 4471744 (+)
G90888 NA non-coding downstream 610771 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 649479 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 681428 5035359 ~ 5036116 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 349949 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 468736 3620406 ~ 3713763 (+)
G90377 NA other upstream 732482 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 901502 3277837 ~ 3280997 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other upstream 908127 3271325 ~ 3274372 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 207717 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 638222 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 823787 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 907105 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1597286 5951217 ~ 5952517 (+)

Expression


Co-expression Network