G90785


Basic Information

Item Value
gene id G90785
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4560776 ~ 4584961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134415
GAAGATTTATAAGCTTTAATAAGATATCAGTGCAGAGATACAACTTATTGGGTAAAATTTCCCATACAGTAATGTCaacaataatcataataacaGTATCATAATAATGTCAATATACatttagcatattaaaataagtacgtacttgctttattttttcgttttataaaaaaaaaaaataaaactgcctATTGTATGCGTTTATCTAATGTTGTCTTTAAAGTTGAAGAAAGCCACAAAACCAGTGGCGCACATAAGGGCAGTGTTATCTGAGATCCAGTGGGTTAAGGGGGCTCGTTCTGGTCAGTGACCTTCATAGTAGTACAGACATACATGTACCAGCGCTTTCTGCACATTCAAACCTCACGCTAACGTCTTCATACGGCTGCACTGCTTTGAGAAAGATATACGAGTTCACCATTTCCTCCTTTGGCATTAACATCTGAACATTCAAGTAATAAGCGTAGAACTGCATTGCTTTGTAGTTTAGTGTTGAACGCTACACGATTCAACGGGAAGCGACCTAGACTTCCTGGTGTTAAGGCACCTGTAACATGTTTAAATATGGGATTATTGCCGTTTGTTAAAACCGAAAGCTTTAAAAAGCACGGGCGCATCGAGTGTAAATGTATCCGGCTCATTTGGGGGAAAATATGCAGAATTTCACCCAACAGCAAATACATTCTTCCTAGACGCGAAGATGAGAAGAGTTGTGTTATCTGTCTAGCACTGTCTATCACTCCAGCAGATCAATCACTGAAAGGTCTGGGAGATCTAGTTTGAAATCTCCTTTTTGTTGGAGGAGTTAAAACACTTATAATCCACATGTGCACTGACATGTACTGGAGGTCATATTAAAGGcaatatcacaaaataaagtatgtttttatatgcgtgtgtgtgtgtgttttattggtcACATTTGAGAATTAtaaaaattccaaaaatattttcttttggggggtaaaatgtgacaaataaaaataaacacattttgatcattttattatataaaatatacttttttttttttattttttttttttttttttttt
>TU134416
GAAGATTTATAAGCTTTAATAAGATATCAGTGCAGAGATACAACTTATTGGGTAAAATTTCCCATACAGTAATGTCaacaataatcataataacaGTATCATAATAATGTCAATATACatttagcatattaaaataagtacgtacttgctttattttttcgttttataaaaaaaaaaaataaaactgcctATTGTATGCGTTTATCTAATGTTGTCTTTAAAGTTGAAGAAAGCCACAAAACCAGTGGCGCACATAAGGGCAGTGTTATCTGAGATCCAGTGGGTTAAGGGGGCTCGTTCTGGTCAGTGACCTTCATAGTAGTACAGACATACATGTACCAGCGCTTTCTGCACATTCAAACCTCACGCTAACGTCTTCATACGGCTGCACTGCTTTGAGAAAGATATACGAGTTCACCATTTCCTCCTTTGGCATTAACATCTGAACATTCAAGTAATAAGCGTAGAACTGCATTGCTTTGTAGTTTAGTGTTGAACGCTACACGATTCAACGGGAAGCGACCTAGACTTCCTGGTGTTAAGGCACCTGTAACATGTTTAAATATGGGATTATTGCCGTTTGTTAAAACCGAAAGCTTTAAAAAGCACGGGCGCATCGAGTGTAAATGTATCCGGCTCATTTGGGGGAAAATATGCAGAATTTCACCCAACAGCAAATACATTCTTCCTAGACGCGAAGATGAGAAGAGTTGTGTTATCTGTCTAGCACTGTCTATCACTCCAGCAGATCAATCACTGAAAGGTCTGGGAGATCTAGTTTGAAATCTCCTTTTTGTTGGAGGAGTTAAAACACTTATAATCCACATGTGCACTGACATGTACTGGAGGTCATATTAAAGGcaatatcacaaaataaagtatgtttttatatgcgtgtgtgtgtgtgttttattggtcACATTTGAGAATTAtaaaaattccaaaaatattttcttttggggggtaaaatgtgacaaataaaaataaacacattttgatcattttattatataaaatatacttttttttttttatttttttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134415 False 1055 lncRNA 0.35 2 4560776 4584961
TU134416 True 1056 lncRNA 0.34 2 4560776 4584961

Neighbor

gene id symbol gene type direction distance location
socs5b socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300 coding downstream 88826 4462022 ~ 4471950 (-)
prop1 LOC107727379,LOC107699286,LOC107586498 coding downstream 114488 4441892 ~ 4446288 (-)
ttc7a ttc7a,LOC107586483,LOC107678602 coding downstream 123284 4404523 ~ 4437492 (-)
epcam epcam,LOC107707150,LOC107727388,LOC107699297 coding downstream 207025 4351284 ~ 4353751 (-)
thada thada,LOC107586496,LOC107590015,LOC107707143,LOC107727367,LOC107590014 coding downstream 235301 4245731 ~ 4325475 (-)
galm galm,LOC107586487,LOC107699302 coding upstream 22263 4607224 ~ 4611108 (-)
hells hells,LOC107727385,LOC107586490,LOC107699304,LOC107708407,LOC107678596,LOC107589556 coding upstream 41427 4626388 ~ 4672250 (-)
gbf1 gbf1,LOC107708418 coding upstream 252817 4837778 ~ 4904092 (-)
ninl ninl,LOC107708420,LOC107589549,LOC107699311,LOC107727377,LOC107582480,LOC107678585 coding upstream 346458 4931419 ~ 4955793 (-)
sema4ga sema4ga,LOC107690158,LOC107582524,LOC107733683,LOC107678493,LOC107708465 coding upstream 423611 5008572 ~ 5040509 (-)
G90750 NA non-coding downstream 147005 4390355 ~ 4413771 (-)
LOC122356721 NA non-coding downstream 213252 4338842 ~ 4347524 (-)
G90633 LOC107590022,LOC107586473,LOC107758132,LOC107666233 non-coding downstream 546775 4010173 ~ 4014001 (-)
G90629 LOC107586470,LOC107698167 non-coding downstream 609179 3945108 ~ 3951597 (-)
G90632 NA non-coding downstream 616512 3943873 ~ 3944264 (-)
G90842 NA non-coding upstream 165471 4750432 ~ 4750968 (-)
G90846 NA non-coding upstream 244790 4829751 ~ 4833144 (-)
G91022 NA non-coding upstream 373422 4958383 ~ 4959411 (-)
G91025 NA non-coding upstream 379641 4964602 ~ 4964959 (-)
LOC122356716 NA non-coding upstream 543551 5128512 ~ 5129707 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 505363 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 604821 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 1125196 3422753 ~ 3435580 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other downstream 1262227 3281337 ~ 3298549 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 1315880 2990418 ~ 3244896 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 88005 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 105921 4690882 ~ 4779732 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 1335541 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 1476724 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1635214 6220175 ~ 6227272 (-)

Expression


Co-expression Network