Item | Value |
---|---|
gene id | col13a1 |
gene name | col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 |
gene type | misc |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056711.1 |
NCBI id | CM032080.1 |
chromosome length | 25085836 |
location | 4690882 ~ 4779732 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
col13a1 | Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 19. Orthologous to human COL13A1 (collagen type XIII alpha 1 chain). |
description |
---|
PREDICTED: collagen alpha-1(XIII) chain |
id | name | namespace |
---|---|---|
GO:0005581 | collagen trimer | cellular_component |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU134496 | True | 7454 | lncRNA | 0.38 | 2 | 4690885 | 4698612 |
XM_043254917.1 | False | 3661 | mRNA | 0.51 | 44 | 4699155 | 4779726 |
XM_043254918.1 | False | 3658 | mRNA | 0.51 | 44 | 4699155 | 4779726 |
XM_043254919.1 | False | 3658 | mRNA | 0.51 | 44 | 4699155 | 4779726 |
XM_043254920.1 | False | 3655 | mRNA | 0.51 | 44 | 4699155 | 4779726 |
XM_043254921.1 | False | 3635 | mRNA | 0.51 | 43 | 4699154 | 4779726 |
XM_043254922.1 | False | 3618 | mRNA | 0.51 | 43 | 4699158 | 4779722 |
XM_043254923.1 | False | 3620 | mRNA | 0.51 | 43 | 4699154 | 4779726 |
XM_043254924.1 | False | 3611 | mRNA | 0.51 | 43 | 4699157 | 4779723 |
XM_043254925.1 | False | 3614 | mRNA | 0.51 | 43 | 4699156 | 4779725 |
XM_043254926.1 | False | 3616 | mRNA | 0.51 | 43 | 4699155 | 4779726 |
XM_043254928.1 | False | 3615 | mRNA | 0.51 | 43 | 4699155 | 4779725 |
XM_043254929.1 | False | 3621 | mRNA | 0.51 | 43 | 4699154 | 4779730 |
XM_043254930.1 | False | 3613 | mRNA | 0.51 | 43 | 4699155 | 4779726 |
XM_043254931.1 | False | 3611 | mRNA | 0.51 | 43 | 4699154 | 4779726 |
XM_043254932.1 | False | 3598 | mRNA | 0.51 | 42 | 4699155 | 4779726 |
XM_043254933.1 | False | 3587 | mRNA | 0.51 | 43 | 4699159 | 4779722 |
XM_043254934.1 | False | 3589 | mRNA | 0.51 | 43 | 4699156 | 4779724 |
XM_043254935.1 | False | 3584 | mRNA | 0.51 | 43 | 4699157 | 4779723 |
XM_043254936.1 | False | 3586 | mRNA | 0.51 | 42 | 4699156 | 4779724 |
XM_043254937.1 | False | 3591 | mRNA | 0.51 | 42 | 4699153 | 4779732 |
XM_043254938.1 | False | 3568 | mRNA | 0.51 | 42 | 4699156 | 4779724 |
XM_043254939.1 | False | 3568 | mRNA | 0.51 | 42 | 4699156 | 4779724 |
XM_043254940.1 | False | 3570 | mRNA | 0.51 | 41 | 4699155 | 4779725 |
XM_043254941.1 | False | 3550 | mRNA | 0.51 | 41 | 4699156 | 4779724 |
XM_043254942.1 | False | 3537 | mRNA | 0.51 | 41 | 4699155 | 4779725 |
XM_043254944.1 | False | 3521 | mRNA | 0.51 | 41 | 4699157 | 4779723 |
XM_043254945.1 | False | 3523 | mRNA | 0.51 | 40 | 4699156 | 4779724 |
XM_043254946.1 | False | 3521 | mRNA | 0.51 | 40 | 4699154 | 4779726 |
XM_043254947.1 | False | 3481 | mRNA | 0.51 | 40 | 4699160 | 4779722 |
XM_043254948.1 | False | 3474 | mRNA | 0.51 | 39 | 4699155 | 4779725 |
XM_043254949.1 | False | 6049 | mRNA | 0.46 | 46 | 4690882 | 4779722 |
XM_043254950.1 | False | 6040 | mRNA | 0.46 | 46 | 4690882 | 4779722 |
XM_043254951.1 | False | 3954 | mRNA | 0.50 | 46 | 4694532 | 4779722 |
XM_043254952.1 | False | 3945 | mRNA | 0.50 | 46 | 4694532 | 4779722 |
XM_043254953.1 | False | 5962 | mRNA | 0.45 | 45 | 4690882 | 4779722 |
XM_043254955.1 | False | 3867 | mRNA | 0.50 | 45 | 4694532 | 4779722 |
XM_043254956.1 | False | 5657 | mRNA | 0.45 | 38 | 4690882 | 4779720 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
hells | hells,LOC107727385,LOC107586490,LOC107699304,LOC107708407,LOC107678596,LOC107589556 | coding | downstream | 18632 | 4626388 ~ 4672250 (-) |
galm | galm,LOC107586487,LOC107699302 | coding | downstream | 79774 | 4607224 ~ 4611108 (-) |
socs5b | socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300 | coding | downstream | 218932 | 4462022 ~ 4471950 (-) |
prop1 | LOC107727379,LOC107699286,LOC107586498 | coding | downstream | 244594 | 4441892 ~ 4446288 (-) |
ttc7a | ttc7a,LOC107586483,LOC107678602 | coding | downstream | 253390 | 4404523 ~ 4437492 (-) |
gbf1 | gbf1,LOC107708418 | coding | upstream | 58046 | 4837778 ~ 4904092 (-) |
ninl | ninl,LOC107708420,LOC107589549,LOC107699311,LOC107727377,LOC107582480,LOC107678585 | coding | upstream | 151687 | 4931419 ~ 4955793 (-) |
sema4ga | sema4ga,LOC107690158,LOC107582524,LOC107733683,LOC107678493,LOC107708465 | coding | upstream | 228840 | 5008572 ~ 5040509 (-) |
slf2 | LOC107690156,LOC107582525,LOC107678590,LOC107567840 | coding | upstream | 260832 | 5040564 ~ 5054042 (-) |
wdr32 | wdr32,LOC107733687,LOC107582526,LOC107708468,LOC107690155,LOC107678556 | coding | upstream | 284566 | 5064298 ~ 5070193 (-) |
G90786 | NA | non-coding | downstream | 68078 | 4549111 ~ 4622804 (-) |
G90785 | NA | non-coding | downstream | 105921 | 4560776 ~ 4584961 (-) |
G90802 | epas1,LOC107586486,LOC107727363,LOC107699276,LOC107589559,LOC107708405 | non-coding | downstream | 120124 | 4545021 ~ 4570758 (-) |
G90750 | NA | non-coding | downstream | 277111 | 4390355 ~ 4413771 (-) |
LOC122356721 | NA | non-coding | downstream | 343358 | 4338842 ~ 4347524 (-) |
G90846 | NA | non-coding | upstream | 50019 | 4829751 ~ 4833144 (-) |
G91022 | NA | non-coding | upstream | 178651 | 4958383 ~ 4959411 (-) |
G91025 | NA | non-coding | upstream | 184870 | 4964602 ~ 4964959 (-) |
LOC122356716 | NA | non-coding | upstream | 348780 | 5128512 ~ 5129707 (-) |
G91066 | NA | non-coding | upstream | 350619 | 5130351 ~ 5130949 (-) |
LOC122356061 | LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 | other | downstream | 1714 | 4672966 ~ 4689168 (-) |
hcar1-3 | LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 | other | downstream | 635469 | 4052743 ~ 4055413 (-) |
wu:fj16a03 | NA | other | downstream | 734927 | 3951763 ~ 3955955 (-) |
timm23b | timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 | other | downstream | 1255302 | 3422753 ~ 3435580 (-) |
dlk2 | dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 | other | downstream | 1392333 | 3281337 ~ 3298549 (-) |
metap1 | metap1,LOC107556924,LOC107733733,LOC107695030 | other | upstream | 1140770 | 5920502 ~ 5926677 (-) |
gng2 | gng2,gbg2,LOC107569409 | other | upstream | 1281953 | 6061685 ~ 6073197 (-) |
LOC122356805 | LOC107666373,LOC107587882 | other | upstream | 1440443 | 6220175 ~ 6227272 (-) |
sdccag8 | LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 | other | upstream | 1578469 | 6358201 ~ 6396426 (-) |
lrpprc | lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 | other | upstream | 1673799 | 6453531 ~ 6499573 (-) |