G90879 (LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465)


Basic Information

Item Value
gene id G90879
gene name LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5003410 ~ 5013662 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134562
ttcattttttttcttttttttttttttttttttttttttttacaacgctgccttgtaaaagttttttccaACTAGTTTGTAACTGAATCACTTACTTGATTCCCCCAGATTGGTTCTCTTGTTGTGTGTGCCCGACTATACATCCCCAACTCCAACCCAATTTTAACGCAAGCATTCTAAAATAAGCCAAAAGCTGTGCTGAGGTAGAATTTCCATTGTTTGGGTCCTTTCCTTGTAATTTGTGACCAGCGGGCTTTCCCCAGTCTGTTAAAAGTCACAAGTTTGACATTTGAAATTCAAACGGATAAGGAGTTTGCTTCTTTTAGAGAAATACCAATGCTTTGTTTATCTTCCAATAAAAGCACTCATTATCATCCAGTTAAAGTTAGTCTGAGTGAAGAAGGGATGTTAGACGACAAGAGTCGAGAACACATCTCGATTTCACACCGAGCTCTCATCAGGTTTACTACACAGCTGCGTGTGCTTCCTCTTCTCCAGGATCCTGTTGAGCTCCTCTGTGAAGGAGTAATAAAGCGGAGACGTGGtgtctccatctgtctgtctcagcAACACATAGCTGTTGCCATTCATCTTGCGTAAGACGCTGGGTAAAGTGGCAGAGAGTCCATTGACGTACTCTGATTCTGGAGGCGGTGGGAGAGGTGGAGCAGGAGGAAGGTCTTTGTTGGGTGACGTAGTTGCTTCTCCGGGGACGATCTGCAGCAGGCCGTCGTGAGCGTCCGGTTTCCCATTGCAATGGCTGGAGATGGTCTTCAGCTCCATGTGGGCACCTCGCTTTCTTTCGGCGCGAGCTGCAGCCCGTAATGAGTATTTACCCCTCCGACCCTGCAAACAGAATCCCACGTAAAGCAGGACAACTGTTAGAACAAAACACAGGCCTCCTAGGATAGTGATTAGGGACAGGTACATGGCCTCCATGTTCCTCACGGACAGGAACTCGAAGCGAGGAGACATTGGGGTCGGATAGAAGTCCTCCGGGGGGTCACTTGCGGAAGTTTGAATGGTCCAGTAGATCGCTGTGGTCAAACGTGGCCTCGTCGGCTCCACGGGAGGAGGTGCGGGAAGCTCTTGGCGGACTGTCAAGCTGTAGATCACCACAGGAACATGGACACCATTCTCCAGGGCAAAACAGTAGTAGTCGCCGCTCTGATAAGGTCGAGCCTCGATGACCAGGAGGCCGTCAGTGCCGATCCGGTAACCGGAGTCCAGCCCGTAACCCTGCAGAGGTTTCTTTCCATTCAGCATCCACTTAGGGGTTGCCAGATTGGAGCTGAGCTCACACTGTAGTAGCACGTCATCACCCGCCATCACAGAGCGAGAGCGGTGTAACAC

Function

NR:

description
PREDICTED: semaphorin-4G-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134562 True 1353 lncRNA 0.49 2 5003410 5013662

Neighbor

gene id symbol gene type direction distance location
LOC122356724 LOC107699313,LOC107582481,LOC107727371,LOC107678550 coding upstream 15186 4968173 ~ 4988224 (+)
aifm2 aifm2,LOC107699314,LOC107708424,LOC107678552 coding upstream 40690 4957649 ~ 4962720 (+)
gins1 gins1,LOC107708421,LOC107727378 coding upstream 71700 4929198 ~ 4931710 (+)
pitx3 pitx3,LOC107699310,LOC107678606,LOC107582478,LOC107708419,LOC107589551 coding upstream 86255 4905566 ~ 4917155 (+)
LOC122356972 h2afy2,LOC107699309,LOC107589552,LOC107708416,LOC105010730 coding upstream 166678 4829737 ~ 4836732 (+)
cpxm1a cpxm1a,LOC107708467,LOC107678553,LOC107567841 coding downstream 41491 5055153 ~ 5063464 (+)
grxcr1b grxcr1,LOC107690195,LOC107733694,LOC107708472 coding downstream 61267 5074929 ~ 5076519 (+)
si:dkey-33c12.4 LOC107690151,LOC107733685,LOC107582527,LOC107708477,LOC107567855,LOC107678591 coding downstream 84912 5098574 ~ 5105932 (+)
LOC122356713 LOC107567852,LOC107678576,LOC107708478 coding downstream 105168 5118830 ~ 5125392 (+)
si:dkey-33c12.3 si:dkey-33c12.3,LOC107582528,LOC107733690,LOC107690152,LOC107567853,LOC107678577 coding downstream 111885 5125547 ~ 5128857 (+)
G90888 NA non-coding upstream 38395 4964702 ~ 4965015 (+)
G90700 NA non-coding upstream 531666 4471065 ~ 4471744 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding upstream 537542 4459639 ~ 4465868 (+)
LOC122357002 NA non-coding upstream 757620 4244608 ~ 4245790 (+)
LOC122356176 NA non-coding upstream 860908 4137317 ~ 4142502 (+)
G90905 NA non-coding downstream 21697 5035359 ~ 5036116 (+)
G90957 NA non-coding downstream 383833 5397495 ~ 5435571 (+)
G90985 NA non-coding downstream 487980 5501642 ~ 5505510 (+)
G90997 NA non-coding downstream 510083 5523745 ~ 5525112 (+)
G91003 LOC107556907,LOC107666376 non-coding downstream 526830 5540492 ~ 5597345 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 5419 4992153 ~ 4997991 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 307568 4561648 ~ 4695842 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 649479 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 1170860 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 1289647 3620406 ~ 3713763 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 164056 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 247374 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 937555 5951217 ~ 5952517 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 968856 5982518 ~ 5986979 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 1240941 6254603 ~ 6358017 (+)

Expression


Co-expression Network