G91172


Basic Information

Item Value
gene id G91172
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5954891 ~ 5956598 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU135036
ccattttatctttaaaatatttaagttcaTATCTATTCAGCGTGAACCATCTCTGCTTCCAGTTCTGcccagaaaaataaataaagatgaaaccAAACCAGCCAACAAAAAACTAGGTGTACGTTTGCTCTAGAACCAGTTAGAGTTTACCTCATTAGCTGGAAACTGACATTTACTGCAAACActggttcatttatttattttttttaattagtctaTATTGAAATAGTAACCATACCTTGATGATTGCTCCTTGTTTAACCAGATAACCCTCTTTTGTGCCAAGCTGTTAACAACATAAACAGATTTCAGCTTTACCCtttcaaatatatgtatattgtgacgggaggagccaacgacagacacagtgggcgtggcgtcaggctcgagaggctttttattattaacaaaataataataatacaaaataaagtgtccaggggaaagtgtccaaataaaagggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggggaagggtccaggtaaggggcggagtccggcggtcgcacgcgctcccctttttctggcccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgtttctttgctccggcggcagagtgggatgagctgtgtgctcacagcctgactacggggtcccacgacgcacttctcggacggcggggtgaggtcca

Function

GO:

id name namespace
GO:0043254 regulation of protein-containing complex assembly biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0051128 regulation of cellular component organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:0090066 regulation of anatomical structure size biological_process
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0007015 actin filament organization biological_process
GO:0032970 regulation of actin filament-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030029 actin filament-based process biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0032271 regulation of protein polymerization biological_process

KEGG:

id description
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05100 Bacterial invasion of epithelial cells

RNA

RNA id representative length rna type GC content exon number start site end site
TU135036 True 720 lncRNA 0.47 2 5954891 5956598

Neighbor

gene id symbol gene type direction distance location
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding upstream 7989 5936401 ~ 5946902 (+)
lrit3b lrit3b,LOC107556923,LOC107666384 coding upstream 19307 5930197 ~ 5935584 (+)
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding upstream 147015 5795240 ~ 5807876 (+)
fgfr3 fgfr3,LOC107733743,LOC107666479,LOC107556915 coding upstream 214001 5708521 ~ 5740890 (+)
ky LOC107666377,LOC107747591,LOC107556906,LOC107733664,LOC107695013,LOC107568638 coding upstream 380458 5567502 ~ 5574433 (+)
pprc1 pprc1,LOC107666421,LOC107747555,LOC107569410,LOC107667059,LOC107733763,LOC107585240 coding downstream 121619 6078217 ~ 6087501 (+)
oga mgea5,LOC107666422,LOC107585241,LOC107667060 coding downstream 132354 6088952 ~ 6101193 (+)
npm3 npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732 coding downstream 145033 6101631 ~ 6103986 (+)
arl3a arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158 coding downstream 147528 6104126 ~ 6107776 (+)
zmp:0000000662 zmp:0000000662,LOC107666523,LOC107747548,LOC107733769,LOC107667074,LOC107585245,LOC108421699,LOC108263473,LOC107569423 coding downstream 196145 6152743 ~ 6159313 (+)
G91180 NA non-coding upstream 26758 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 28143 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 28566 5924540 ~ 5926325 (+)
G91174 LOC107666555,LOC107747569,LOC107556920,LOC107733787,LOC107585221,LOC107695029 non-coding upstream 78152 5873007 ~ 5876739 (+)
G91127 NA non-coding upstream 185373 5769290 ~ 5769518 (+)
G91250 gabrb1,LOC106937613 non-coding downstream 41844 5998442 ~ 6002062 (+)
G91324 NA non-coding downstream 413612 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 496146 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 737064 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 766682 6723280 ~ 6755554 (+)
lamtor3 lamtor3 other upstream 2374 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 683644 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 756487 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 956900 4992153 ~ 4997991 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 1259049 4561648 ~ 4695842 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 25920 5982518 ~ 5986979 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 298005 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 1136546 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1814962 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1879582 7836180 ~ 7838945 (+)

Expression


Co-expression Network