G91250 (gabrb1,LOC106937613)


Basic Information

Item Value
gene id G91250
gene name gabrb1,LOC106937613
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5998442 ~ 6002062 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU135152
CAAAGACGAAGTGACacaaaaaaagatgcacaaacacaaacttaCTGACCTGAGGCCGTAGAGCACAGTCCCATCAGGATGCAGGCGAATCATGCGGTTCTTCACTGTGACCCCATGGACAAAAGATTTCTTGTCATTTATAAAGTAAGTATCAGGCACCCAGAGTTGATCAGCCACTCGGTTATCCAAGGTAAGATTTAGAGGAATCCCTGTGTAAGACAGGCGCTTATCACGCCAAGACTGCTGGAAATACATGGTGATGGTATAGtcctgaaaaaaacacacagagctgTTCATTTAATCAGTTCCGAAGTATTGGAAACCTCACATTAATGCCAGATTAGATTAGAAACAAGTGGCATTTACTGCAAGGAAAGACAGCATaagcacatattttaaataaaacatatttggtttcaaatgataaaatgttaCGTTTACAGCTCAAGCTAAAGTCAAAAAGCATTCAAGTGCATCACTGCCTTCAAGCACACATGAAAAACATGGACCTCCTGGCATTCGTTATTAAAAGAATCCCTTCATTCTATTCAGACACCTAACAAggaaACAGATTTAGAATCATCCATTTTTCTAAGAAATGCTTGTGTTGCTTGTTTGGTTCAAGTGTTATTTTAGagttaaaatgtgaaaaaagtatatacaatacatccaaaaaataaaaacactaaattttGTAGGTTTCCAGTGGTTTTAAGAGTGAAAACACGCGCATGCTTATTAGCATATCGGCATATGCCAACAAAGCAAATACATACTTGTGCATCTGTGCATCTCGTTCCCCATTTCATCTGCATTTGTAATCTCAGGGAGGACATCTGCATCCTTTTCTGACATATCTAAGTGGATGTCAACCACCTCGAGGCTAAGCTTCCCTTCCCCTCAGCCAAGACCTTGCTAACCCGGTTTTTCTCAGCTGAAGGTCACACAGCCACTGCCTCCAGATgtgtaaaaacacaaagcatcaTCCAAGATGACAAGGTCTCCTTTGCAgacaaaacaacacaattaTAACAACTGCGTGGCCCTGGTGCTTCATGCTCGACAATAACATAAAGCTGCATTCATCATTGCTTTGAGGTCAAGTTAATCAAGTCTGTGAAATCACCAActtaaatgaaactaaatgagATCCCGTTCCAACAGTGCATCCATATTTCAGACACTGCTCTGCTCTCAGTAATTGCCACTTACATGACTGTGCACTTCATTTAGGTTTGCCGTGAAAAGGAAAGAGTCTCTTAAGATCCCAAATGCATTGGGACTAACTGTAAAGTCAAAGGTTAGGCTGAAAAACGCAGCCACATTTGCACAGAGGCTTCTGCTTAAACTCCATCTCCCAGTCGCCACGTCTCTCAGCTGAATAAGTGGTGAAACAAATTAAGTTGAGATCCCATTAAACCAACATGATAAATGAGAGTGAAGGTTAAACAGACAGAGTGGATTCTCCCTGTCTCTCACAGACACTTACAAACCCCTATAAAACAATCACAGCATCTGTCTGTGTCCGTTTTAAGACACGTTTTAGACTGATAGGCAAATAATACTTATGGAGCTAATGCAGTCCAAAATCAACTTTATACATCTTTAAAAGCCATCAaagatacagaaaaaaagattgcaGCAACTTCTGACTGCATTAAGTCAGAACTAATTACTCCACTTTCtttttgtacttaaaaaaatgtattttaagttgAGATTTTATCAATTTAGCAACAATTTGCATATTCACTGTtctcagaaacaaacaaatatttcataatcgTGACTATTCTATTCTGCaatttataatatgtttttatttctttacttccTAACATTCAACGTCAATAagtataaatgttgaaaacaaagtTCCCAAATGAACGTTAAACTAACAACACATGCAGCATTTATAGTTGTGGACATATCACATCTAATAATCATACAGTGGAGACCCTTTAATATTTACTTGTTAACATTATTGCTGTAAACAATACAAGACAGTTCCATCTCCCGCTGTTCTAGGTTCAACTGAAGAGCGTGAAATCGGTGCTCAATGCTGTACGAGACACAAActgtgtaaaaatataacacaacaAATTAAAGAGACTATCTGTGCTGTTgtggctaaaaataaaatattgacaatACACTACACTCTTAATTAATACAACTTAATGACTAGtattaattttcctttttttataagCATTTAAACAGCACAGTAGATCTAGATATACGTCCTTGTGTTTTAGGGTAGTAACTGTTTAGCACAAGGTGTTGTTTGCTGCAATGCAGTAAAATTTGATCCTATCAATATTAACCCAGGGAATGtgcaacatttttcattaaacataaaaggAACAGCAATggtgattaaaaatgaaaataatttggATGGATTAGTATTCCCTATATGTTTGATGTACTAAAAGCACTTCAGATGTTTCAGTTGCCCTAAAGGGGTTCAGGTAGGTCCTGTCCCAGCATCACTGCTCCTCCACACTCATCTGTGCTGCAAAGTCTCTGTTAAGATTCTTCTCACAGAGCACACGCACATCATCCAGCACAGTTTGCAGATTTAAAACTGCCTATGTAATCACTTCATAACATGCCTTTGGGGGGGCGGGGGGCGtcctgaaaacatttttcattctgaGACGATGTACTGCATGAATCCATGAACCTTAAACTGAAATTTAGAAATGCTACTAAGATGACTCTGATCTTGTTTAATATAACAAGCGACGAGAACTTTTTGATCCTTCAGGAGGGACAGACGATGCATGCGGTTTTGCTCACATTTGATGTTAGGAATAAAAGTATCTATCGTActttcttcttttcattcaGTGAATAATACTTTTGAcacacactaccattcaaaagaaGGCTTgattagatgtttttttttaaaagtcccTTATGcgcatcaaggctgcatttaacaAATACGGTACAATAtcattaaatacagtaatatcattaaatattattacagtttaaaatgtttattttactatattttaataatgatgtaaatgtaatgtgtgtaatgtgatattttgatttgctgctaaactaattattattaaacaattcattattatgtgttgaaaacagtcgtgccgtttaatattttttgtcgATGTTGTCATTTTTTCAGCCTTCTTAGATATAtctaaagtttaaaagaacataaattatttaaaactgaaatattgtgcAAGTATTTAAAAGTCTGTccttttcatttgatttaaggCATCCTTGCGGAATAaatttataatttctttaaaaataaatctttaaacagttgtgtgcttaaaataaaatgatttaataacatttattaacatttatttctgttattattattctgtttctATGCAAATAGTtcctaaaacataaataataacaggT

Function

symbol description
gabrb1 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in brainstem and eye. Human ortholog(s) of this gene implicated in autistic disorder and developmental and epileptic encephalopathy 45. Orthologous to human GABRB1 (gamma-aminobutyric acid type A receptor subunit beta1).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135152 True 3426 lncRNA 0.35 3 5998442 6002062

Neighbor

gene id symbol gene type direction distance location
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding upstream 51540 5936401 ~ 5946902 (+)
lrit3b lrit3b,LOC107556923,LOC107666384 coding upstream 62858 5930197 ~ 5935584 (+)
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding upstream 190566 5795240 ~ 5807876 (+)
fgfr3 fgfr3,LOC107733743,LOC107666479,LOC107556915 coding upstream 257552 5708521 ~ 5740890 (+)
ky LOC107666377,LOC107747591,LOC107556906,LOC107733664,LOC107695013,LOC107568638 coding upstream 424009 5567502 ~ 5574433 (+)
pprc1 pprc1,LOC107666421,LOC107747555,LOC107569410,LOC107667059,LOC107733763,LOC107585240 coding downstream 76155 6078217 ~ 6087501 (+)
oga mgea5,LOC107666422,LOC107585241,LOC107667060 coding downstream 86890 6088952 ~ 6101193 (+)
npm3 npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732 coding downstream 99569 6101631 ~ 6103986 (+)
arl3a arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158 coding downstream 102064 6104126 ~ 6107776 (+)
zmp:0000000662 zmp:0000000662,LOC107666523,LOC107747548,LOC107733769,LOC107667074,LOC107585245,LOC108421699,LOC108263473,LOC107569423 coding downstream 150681 6152743 ~ 6159313 (+)
G91172 NA non-coding upstream 41844 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 70309 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 71694 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 72117 5924540 ~ 5926325 (+)
G91174 LOC107666555,LOC107747569,LOC107556920,LOC107733787,LOC107585221,LOC107695029 non-coding upstream 121703 5873007 ~ 5876739 (+)
G91324 NA non-coding downstream 368148 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 450682 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 691600 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 721218 6723280 ~ 6755554 (+)
G91529 NA non-coding downstream 812948 6815010 ~ 6861516 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 11463 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 45925 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 727195 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 800038 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 1000451 4992153 ~ 4997991 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 252541 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 1091082 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1769498 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1834118 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1856636 7858698 ~ 7886690 (+)

Expression


Co-expression Network