lrpprc (lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880)


Basic Information

Item Value
gene id lrpprc
gene name lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6453531 ~ 6499573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU135473
GAGGCAGCTGGTAAAGGATGAGCCCAGTGTGGCAGTCCGCACCAAGCAGGCTCAGCTTTTGACTGGGCTCTGGCCAAACTGGACAGCTCAATCCGAAGGACAGGCCGGGTCACCAAAACACTGCTGCTGCGCATCTTCCATGATGTCTGCAGAACAGGATGTCCAAACGGAAATCAAGCTCTGTTATTGCTGAGAAGCTGTGGCTCTCTGCTTCCTGAGGTTCCCTTGGCGGAGCGCATAGAGCTGTCACAACGGATCTGGGATGAGCTTCAAGCACTGGGCGCCCCCTATGATGTGAGCCATTACAATGCCCTGCTTAAGGCGTATCTGCAGAATCAGTTCAGATTCTCTCCAACCGACTTTCTTGCTAAAATGGAAGCTGCTAATGTTCAGCCGAACAGGGTGACTTATCAGAGACTAATCGCAGCCTATTGTGAAGTCGGGGACATTGAAGGTGCAAGTACGATCCTGGGCTTTATGAAGAGCAAAGATCTCCCCATAACGGAAGCTGTGTTCAACTCGCTAGTGACAGGCCATGCCCGTGCAGGG
>TU135474
TCCTCTCTGTGCAGGTTAAACATGGCTGCGCTCTTAAGATCAGCCCGGTTCCTTAAATGTTCACCGGTGGCGTTGCTTCAGGCCTTTGGAAACGGCAGACATGTACCGGCAGCTGGTCGTCTTTACAGTGGAGCGGTCGGGGCTACTCGTGCAGGGTTATGTGTCCATAAAGTCCCGGGACGCTTAAACGTAAACAGTTTGCTCTCATTCAGATCAGTCTTGCCCTGTGTGAGCTGTCATCAGTATAGTGTTGTCCCGA
>XM_043254848.1
CGGATGTCCTTCGCTTTTCCTCTCTGTGCAGGTTAAACATGGCTGCGCTCTTAAGATCAGCCCGGTTCCTTAAATGTTCACCGGTGGCGTTGCTTCAGGCCTTTGGAAACGGCAGACATGTACCGGCAGCTGGTCGTCTTTACAGTGGAGCGGTCGGGGCTACTCGTGCAGGGTTATGTGTCCATAAAGTCCCGGGACGCTTAAACGTAAACAGTTTGCTCTCATTCAGATCAGTCTTGCCCTGTGTGAGCTGTCATCAGTATAGTGTTGTCCCGGAGCAGAGGCAGCTGGTAAAGGATGAGCCCAGTGTGGCAGTCCGCACCAAGCAGGCTCCTTTTGACTGGGCTCTGGCCAAACTGGACAGCTCAATCCGAAGGACAGGCCGGGTCACCAAAACACTGCTGCTGCGCATCTTCCATGATGTCTGCAGAACAGGATGTCCAAACGGAAATCAAGCTCTGTTATTGCTGAGAAGCTGTGGCTCTCTGCTTCCTGAGGTTCCCTTGGCGGAGCGCATAGAGCTGTCACAACGGATCTGGGATGAGCTTCAAGCACTGGGCGCCCCCTATGATGTGAGCCATTACAATGCCCTGCTTAAGGCGTATCTGCAGAATCAGTTCAGATTCTCTCCAACCGACTTTCTTGCTAAAATGGAAGCTGCTAATGTTCAGCCGAACAGGGTGACTTATCAGAGACTAATCGCAGCCTATTGTGAAGTCGGGGACATTGAAGGTGCAAGTACGATCCTGGGCTTTATGAAGAGCAAAGATCTCCCCATAACGGAAGCTGTGTTCAACTCGCTAGTGACAGGCCATGCCCGTGCAGGGGACATGGACAGCGCTGAAGGCATCCTGTCAGTCATGAAAGGTGCAAGGATTGAGCCGGGCCCAGAGACGTACCTGTCTCTTTTAAAAGCGTATGCTGAGAAAGGCGATATTGATAAAATTAAGCAGACTCTAGAGACAGTGGAGAATGCAGATATCCTTCTGATCGACAGAGATTTGATGCAGGTGGTTTTCAGTCTGACTAAGGCCGGCCATCAGCAGTATGTGCCTGAGATTGTGGATAGGATGCGTCACGATAGAGGATATGTGCCAGATGCTATGAACCTCTGCTTGAGTCTGATTACTCACGGACATGAAGACACAGCGTTTTATGTGCTGAAGAGCTTCACCAACCTGCTGTCAGAGTCACAGACCGGTGACTCTCCAAACTTGGGAAACTTCTTTCTTCGCCACTGCGTCAGTATGGACAAGTCTGTGGAAAGCATAGTTGGGTTTTGCAAAGATCTAAAAGATTCAGGTCTGCACTCATCGCCACTGCAGTACACCCTTCAGTGTGCCCTGGAAGATAAAAATACCGGTATGGCTGTTGAGCTCATGAGAAGGATGAAGGAGGAGGGATTGCCTCTCAGACCTCACTACTTCTGGCCCATCTTCACTCATTaccagaaagagaaaaacattccCGGTGTTCTGCAAGTTCTGAGAGCCATGCAAGAATTGTCTTCTTCGTCAGACGTTGATACTTTTAGCATCTACATCCTGCCGTCTTTCCCATCAGCGGACAGTGCCCGCACCTCTCTGAAGAATGCCGGTATTGACGTGGATCCCAATATTTTGACTATGGCAGAAATACGAACGGAAACCTCACGTGGAAACCTCGCAGAGCTGTTCTCTCTGATGTCTTCATCTGCTGTTCCATACATTGACCTCAGTGTATTCAGAGGCACCCTGATCTCTGCATTCAGAAGGTTTGAGGATGTGGAGTGTATGACGAAGATTACAGAACTTCTCTTTAAAGACCCTCGGTTCAGTAATGCTGACCATAAAAATTCAGaaaatgtgGCCTACTTCCTTTACAGCCTGATTAATTCCATGACTGAGACAGAGGTGCGGTCCAAAGAAGAGGAGATTAGAGAGTACTTCGGCCTGCTTAAAAACATGAATATCATCATCTCACTTGAACATCTTTAGAGGATCAAGAACCTACTGGAGTCCTACAAAGTTCCAGGCCTTTTGAAGgatGTCTCTGCTCTTACGGAGAAAAATTTGGATGCTGGGTTGGATACTAATGCAACACAGCACAaagtatttggTTTTGAGGGGAAACTTTCATTACTGGAGAAGACCCTGGCAGAGCAGAAAGCTGAGGGCATACCAGTCAGTTCCACCCTCAAAAAAGTCATCTCTGCCCTGTGTTTCGAGGAGAAACTGGAGGAAGCTCTGGAGCTTAAAACTCAGTATGAAGCGGATATGACTCCTGCCTCATATGCCATGCTCATCAACCTGTGCTGCCGTCATGACAATGCTGAAGAAGCCCTCAAGCTAAAGATGGAATTGGCTCGCAGGGACTCTGAGGTCGCGCTGGATGCTTACAAGTATGTGGCCTTGGTCCAAGTGCTATCCAAGCACGGCAAGCTGGAAGACGCGATAGACATGCTGAAGGAGATGAAGGAGAAGAATGTGCAGTTAAGGGAGAACACGATCAGTTTGCTCGGCCAAACGATAAACAAGGCTGCATTGAAAGGAGATGCCAACACTATTCGACGCCTCCAGGAGACAATCTTCTCTTTGGGCCTGGCCAAACCATCCAGTGTCCTCTGCTCACCCCTCATCAGTTGCTATCTGGAGAGTGGGAACTATGAGGGTGCATTTGATGCCACTGTGGAGGTCCATAAACAATACAACCAGATGCCCAAAATCCATGACCTCATCTGTGTCCTGGTGGAAAAAGGAGATGCCGAGCTATTACAGAAAGTCATGGAGTTTTTAAGTCGGGAGCGAGGCGAGATGATGATGCTCTACGACCTTTTCTTTGCGTTCCTGCAAACGGGCCGCTACAAGGAGGCACGCAAAATCATCGAGACTTCTGGTCTAAGAGCACGCCCGACCCGTCTGCAGTGGTATGCAGAGAAATGCATTGCAGCCCAGCAGATGGAGCCCCTCGAGAACATGGTGGACATGACTCTCAAGTTGTTTGAGTGTGACAGAGATGACTTGTACTACTATTTGTTACGCCTCTGCAagAAAACTAATAACTGGCAAAAGGCTGAGGCAACTTGGATAAAAATGCAGGAGGAAAATTTGGCTCCAAGAGAGAGGACCCTGCGTTTGCTTGCTgatatctttaaaaacaataacaaggAGGTGCCTTTCGTGGTGCCTGAGGTGTGGTTTGAAGAGGATAAAAGTGAGCCTGAGATGTTTTTGGAGAAAGAAATGGTTCAGACTTCCTCTCGTATAGTTGCTTCACCCCTTAAAGGGGCCACAGTTGATGACTACAGACTTAAAATCCTGTCTCTTTGCAAGAAGAACAAAGTTCAAGAGGCCTATGACGTCCTGAAGAGTGCAGATAAAATGGGCATAGTCTTCAGCCCTGATCCATATGATAGCCTCATCAAAGGCCTCCTAGCCAAAGGCAACATTGAGGATGCTATGACCGTCAAGAACATTGCCAACGAACATATTCCTAAATTCAGATTTAGTGACACTGCCATCAACCTTTTCATCATCTCTCAGGTGAAGAGATGCCAGATGAAAGACGCCATAGAGACTTTAAAGGGCATGTTACAAGCTGACCAGCTGCCCACTCAGCTGGCCCTCACTCGACTGGTCCAGGGTCTCGCAAGTGAAGGGAACACACAAGGCATCCTGGAAGTGGAGGCCTTGATGAAGACTGTTGGCTTATTCAACCTGTCCAAAATGTTATTTGTCAATAATACCGCTCTCTCTCATATTAAAAATGATGACGTTGACAGTGCGGTGGAGCTGTTGGAGTCCTTTTACACCCAGAACACAGAGAGTGAGAAATCCAGTATTTATTATGTCTACCGCAAAGTCATAGAGGCCAACAACGATGCTGCCCTAGACAAATTGAGTGCCATGGCGGAAAGGCTCTGCAATCACTTTGCCTCCTACAGAGCCGCTACAGACCTTTTCCTGATTTACTTGGACACGGGCAGGACAGAAGAGGCCAAGTTCCTCCTGCAGCGCTGTGCGGCCATCAGCGAGCAGAAGAACGCGTTGTTCACGTTCATGTTCCGAGCGGCCCGGCAGCAGGGACAGGCTGCTAAAATCCTAGCTCTGTCTGAGATGATCCCTGACTTCACAGAGAAGGAGAATATCTACATACATTTGGTGAAATGCTATGGTTTAGAGAAGGACTTCAGTTCAGCGAAGGCTCTGTATGAGCGCATGCAGTCTGAGGGGGTGAAGGCTGATGAGTTGACTCTCAAGAGACTGGCACTAATATACAAGGAAGCTGGAGAAACCCCTCCCTTCGAAGAGCCTCCGGAGTCTTTTCATTTCTACGCGAAGAAACTGAAGAACCAGCAAACTGAGATCAACGAGTCGGTCGACAATTAAAAACAACCtcagctttttatatatatatacattcaaaaGATGTGCACAGCTTGTGTTATACTgcgactctctctctctctctctctctctctctctctctctctctctctctcttcatagtgatgtgattattttttgtttttttttgcccttcATAATGCTGTCATGATATGGttaaagtgtacatatatacaaataaatgtaaacccAAAACTTTAgtggcttttttttataatttattttggacATTTTCTTTCCCGAGGTGATTGTCACGTGAGTGACGTTGTATGAAAACGCACATTATGACTTCTGAAAATGCAAGTATGTTCACAGAAGGCGCAATAATACACATGGGGGGATATTCCCGATATGATCATACGGTCAATTTATGCTTGGTTATGTAGTAATGCATACTATATAATAAACATCTCGTTGGATTCATCGTG

Function

symbol description
lrpprc Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and segmental plate. Human ortholog(s) of this gene implicated in French Canadian Leigh disease and Leigh disease. Orthologous to human LRPPRC (leucine rich pentatricopeptide repeat containing).

NR:

description
leucine-rich PPR motif-containing protein, mitochondrial

GO: NA

KEGG:

id description
K17964 LRPPRC; leucine-rich PPR motif-containing protein, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
TU135473 False 549 lncRNA 0.53 5 6496935 6497935
TU135474 False 259 lncRNA 0.52 2 6497941 6499556
XM_043254848.1 True 4813 mRNA 0.47 43 6453531 6499573

Neighbor

gene id symbol gene type direction distance location
abcg5 abcg5,LOC107747536,LOC107733783 coding downstream 9083 6433477 ~ 6444448 (-)
dync2li1 dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586 coding downstream 20503 6429382 ~ 6433028 (-)
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding downstream 189536 6254597 ~ 6263995 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908 coding downstream 233775 6212541 ~ 6219756 (-)
sufu sufu,LOC107666454,LOC107667077 coding downstream 307500 6134613 ~ 6146031 (-)
prepl prepl coding upstream 53915 6553488 ~ 6560661 (-)
six2a six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704 coding upstream 220488 6720061 ~ 6722866 (-)
srbd1 LOC107711437,LOC107666540,LOC107585258,LOC107733719,LOC107698739 coding upstream 289259 6788832 ~ 6840561 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 361715 6861288 ~ 6863797 (-)
dennd10 fam45a,LOC107711433,LOC107733722,LOC107585262,LOC107602482 coding upstream 368125 6867698 ~ 6871804 (-)
G91454 NA non-coding downstream 5105 6446498 ~ 6448426 (-)
G91420 NA non-coding downstream 161328 6290881 ~ 6292203 (-)
G91406 NA non-coding downstream 245568 6206094 ~ 6207963 (-)
G91395 LOC107666411 non-coding downstream 269534 6183634 ~ 6183997 (-)
G91364 NA non-coding downstream 352348 6099268 ~ 6101183 (-)
G91459 ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124 non-coding upstream 37028 6536601 ~ 6538368 (-)
G91490 NA non-coding upstream 187504 6687077 ~ 6687295 (-)
LOC122357105 NA non-coding upstream 194089 6693662 ~ 6703923 (-)
G91513 NA non-coding upstream 287694 6787267 ~ 6787607 (-)
G91574 eif3a,LOC107666466 non-coding upstream 379649 6879222 ~ 6879894 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 57105 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 226259 6220175 ~ 6227272 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 380334 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 526854 5920502 ~ 5926677 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1673799 4690882 ~ 4779732 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1310276 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1543992 8043565 ~ 8047901 (-)
G92267 NA other upstream 2615520 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 3674840 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 4132677 10632250 ~ 10634566 (-)

Expression


Co-expression Network