G91459 (ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124)


Basic Information

Item Value
gene id G91459
gene name ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6536601 ~ 6538368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU135475
CAAACTACACAGCTGAGTGAATTTAACAGAAAAGACTAATATCAGTTTCTTGATTAAATTGGTATTTTATCCAGCTACATTAAGGTGTGTTGTTGTCGCAAAACTTCTGTAAAAATCGTGTTAAGTGTTTAAATTCACCACGGaaagaaatatatgctataaaGATTAAACAGCACTGACATAGAAATCCAAAAATCGCAACTCTGACTAAAACCATGgtgttgaatgaatgaatactcCCAAGCATACGGTGGGCCAACAAATTCTATTTCTCACCTTCCACTCGTGACTCGAGGTACTTGTCCAACTCAGCATCTCTCTTTACCGCCTCTTCTGACACCTGGGGTGCATTTGGCAAACAGACTAATACAATACTCATATTATCTCGACTTCcCTTATGTAGACAAGTATCCACAACCTCATTGCACACTCTCTCAAGGTCATCCGTCACCTCCAGCCTCGATCGCACTTTAAGGCACACAGCTCCTCGTTGCTCATCACATCCCAAATACCGTCACGCGCCAGCACCACGAATTCATCCTCTGCATCTGACCGAGCGATTTCGAACACTTCAGGCTCCGGTGACACAAGCTGCTCTGTGGGGCCCTTGCCCTCAACACACTTGTAGTCATAGTCACCCAGTGCTCGGGATACAGCCAGCGATCCGTTAACCCTCTGGATCATCACAGAGCCACCCGCGTTCTGTATGCGCTCCTTCTCCCGTGGGTCGCAGGGCTTATGGTCCAGCGTGGAGAAGCAGACTTGAGCATTTGCGGCAGAGAAGGGCCCGAGAGTCCCCGCAGTTAATGAAGTACAGATGTTCTGGAGAGAGCAGCACAGCCACCGCGGTGGAGCCGCTGCGGTCCATGCCGTTCCGCAGGTCTGTGAAGCTGCGCATGTGTTCGTCGATCCTCAGGAAGCCGG

Function

symbol description
ppm1b Enables protein serine/threonine phosphatase activity. Involved in several processes, including negative regulation of interferon-beta production; negative regulation of intracellular signal transduction; and peptidyl-threonine dephosphorylation. Located in cytosol and nucleolus.

NR:

description
PREDICTED: protein phosphatase 1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135475 True 924 lncRNA 0.49 2 6536601 6538368

Neighbor

gene id symbol gene type direction distance location
abcg5 abcg5,LOC107747536,LOC107733783 coding downstream 92153 6433477 ~ 6444448 (-)
dync2li1 dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586 coding downstream 103573 6429382 ~ 6433028 (-)
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding downstream 272606 6254597 ~ 6263995 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908 coding downstream 316845 6212541 ~ 6219756 (-)
sufu sufu,LOC107666454,LOC107667077 coding downstream 390570 6134613 ~ 6146031 (-)
prepl prepl coding upstream 15120 6553488 ~ 6560661 (-)
six2a six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704 coding upstream 181693 6720061 ~ 6722866 (-)
srbd1 LOC107711437,LOC107666540,LOC107585258,LOC107733719,LOC107698739 coding upstream 250464 6788832 ~ 6840561 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 322920 6861288 ~ 6863797 (-)
dennd10 fam45a,LOC107711433,LOC107733722,LOC107585262,LOC107602482 coding upstream 329330 6867698 ~ 6871804 (-)
G91454 NA non-coding downstream 88175 6446498 ~ 6448426 (-)
G91420 NA non-coding downstream 244398 6290881 ~ 6292203 (-)
G91406 NA non-coding downstream 328638 6206094 ~ 6207963 (-)
G91395 LOC107666411 non-coding downstream 352604 6183634 ~ 6183997 (-)
G91364 NA non-coding downstream 435418 6099268 ~ 6101183 (-)
G91490 NA non-coding upstream 148709 6687077 ~ 6687295 (-)
LOC122357105 NA non-coding upstream 155294 6693662 ~ 6703923 (-)
G91513 NA non-coding upstream 248899 6787267 ~ 6787607 (-)
G91574 eif3a,LOC107666466 non-coding upstream 340854 6879222 ~ 6879894 (-)
LOC122356287 NA non-coding upstream 478855 7017223 ~ 7045575 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 37028 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 140175 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 309329 6220175 ~ 6227272 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 463404 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 609924 5920502 ~ 5926677 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1271481 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1505197 8043565 ~ 8047901 (-)
G92267 NA other upstream 2576725 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 3636045 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 4093882 10632250 ~ 10634566 (-)

Expression


Co-expression Network