G3614


Basic Information

Item Value
gene id G3614
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 5372248 ~ 5373134 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU4021
AAACTTTAATCTCATAAATATGGTGAATTCAGGGTGACTGGGACACACTTTGTCATTGAGATGAATTGGAAAATGTGTCCCAATCAACTTGAATTCACCCTACATATAGAAGTCTTAATCAATGGAATATAAAAATGGCCTTGAAAAAAGTTCTTTCAAAGTCAATCATGAGCATTCATCATTCTCAAGCATCAAGAAGAAAAATGTACACAGTGAAGACCAGGAGCTGCTGCAGTATTCCTCGGCCACTTTCAGTCTCTCGATCCGGTCAGAACAGTAATTAATCCCCGCGGGCGACGGTAACGGGACTCTGGAGGTGGGACGCGCGTCCTTCAGTCTGAAGTGCGCATCCGCGGGCGCGCTCCTGCACATACTGGCTTTGACCATCGCCGTAGAGTCGCGACACAATCTCTTCTGCTTTTTCAGCGAACGGGCGATCTGTTTCCAATAGGCTTTGGTATTGGATGCGTATTGCTGACATGTTGCGGGCTTTGCTACATATTCGCAGCCGAAAGTCTTTGCCCCGTTTTTGCAGGTGACTCCCAATTCAAACGCATCACCCTCGCGCGCAGCGAGCCACGAGCACCGCGCTCCATCCTTCAGCGAGAATCTCCCTTTTAGGCTACTTTCATTCCGTTGACCTCTTCCCCTCCCCTTCCTATCTGTCTGTGCTCTCCTTCCTCTATCTCTCAGGCTGTTCACCTGTACGAATTGTTGCACGATACAGGCGAAAATCAGAATGAGAGCAATGTCTGTCACGCGCATCATGTCCTCATCGGAATTAATCTCAAACAACTTTATAGAAAACCGGACGCGGCATTTGTGGTCACAGATGATTTTATAGATAATAGATCAACTGATATGGTATAACAATGCACGAGAGCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU4021 True 887 lncRNA 0.51 1 5372248 5373134

Neighbor

gene id symbol gene type direction distance location
CI01000000_05311908_05314253 NA coding downstream 57992 5310741 ~ 5314256 (-)
CI01000000_05286804_05288152 NA coding downstream 84034 5286788 ~ 5288214 (-)
CI01000000_04986976_04998622 NA coding downstream 373229 4986709 ~ 4999019 (-)
CI01000000_04924131_04926561 NA coding downstream 445482 4924058 ~ 4926766 (-)
CI01000000_04728056_04730605 NA coding downstream 641477 4727845 ~ 4730771 (-)
CI01000000_05380329_05386853 ANXA5A coding upstream 6921 5380055 ~ 5386853 (-)
CI01000000_05409025_05413963 TMEM33.L, TMEM33 coding upstream 35105 5408239 ~ 5414411 (-)
CI01000000_05422567_05424822 CRYBA1L1 coding upstream 49112 5422246 ~ 5425430 (-)
CI01000000_05431517_05435978 CABP2B, CABP2 coding upstream 58383 5431517 ~ 5435978 (-)
CI01000000_05465020_05466303 NA coding upstream 91510 5464058 ~ 5466516 (-)
G3613 NA non-coding downstream 1685 5369678 ~ 5370563 (-)
G3612 NA non-coding downstream 2738 5368834 ~ 5369510 (-)
G3586 NA non-coding downstream 25903 5329960 ~ 5346345 (-)
G3467 NA non-coding downstream 94400 5272812 ~ 5277848 (-)
G3478 NA non-coding downstream 177018 5194958 ~ 5195230 (-)
G3615 NA non-coding upstream 873 5374007 ~ 5374347 (-)
G3616 NA non-coding upstream 3079 5376213 ~ 5376514 (-)
G3627 NA non-coding upstream 20549 5393683 ~ 5394503 (-)
G3629 NA non-coding upstream 21713 5394847 ~ 5400250 (-)
G3628 NA non-coding upstream 28545 5401679 ~ 5401968 (-)
G2730 NA other downstream 982096 4386383 ~ 4390152 (-)
CI01000000_04079738_04081018 MIF other downstream 1291131 4078121 ~ 4081117 (-)
G2484 NA other downstream 1798694 3570066 ~ 3573554 (-)
CI01000000_03564077_03564373 NA other downstream 1805157 3562887 ~ 3567571 (-)
CI01000000_03245643_03246684 NA other downstream 2125533 3245134 ~ 3246721 (-)
G3650 NA other upstream 167329 5540463 ~ 5540881 (-)
G3716 NA other upstream 627273 6000407 ~ 6000769 (-)
G3931 NA other upstream 783879 6157013 ~ 6403525 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other upstream 5031194 10407395 ~ 10409950 (-)

Expression


Co-expression Network