LOC122356687


Basic Information

Item Value
gene id LOC122356687
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8336295 ~ 8338716 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU135989
TGCTGACAACCACCTCCCTGGTGCTGAGTCAGGATTATTCTCCTTGTGGAGTAGGGGGTCACCATACTAGTTACAACTGGTTTTAGAAGCTTACCTTGACTGTAGGCCAAGCGCTCCATACTTTCACTATGTGTGATGCCCCACCGGTGGAGGCTCTGAGGGGAATACATCACTGCTGCTCCACGACCCCTTCCAGACTGAAGACGAACTTCTTGTCTCTCGaaaacgCGGGGAATTCTC
>XR_006252367.1
tttgttttttgtttttctttgttttaacaaaTCACATCGGCTCAAAAGCGACCACGaataaataaaaggcaaaaatagCCTTTTGTCAAGTGGTGTATGAAACACGGCTCGCGCGGAAGTCGCTTTCGAGCAGATTCCTGTTTCCATGATATTCCCGACCACGTGTGGAGAATGTTAATTGGCTGCACGAAGTAAACGACGTGACAGTGGGAAGAGCTAGGAAACAGCTAGGCGTCGGTCACAGTCCCCGCTTTATATTTTGAGTCAGTCAAATTAAAGCTAACTTCTTATGCTAACTAGCGGTTCTGACACTGAGCAATTTAAACTTGTGCTTTAAAGTGAACATTAAAAACCTCTGCTGACAACCACCTCCCTGGTGCTGAGTCAGGATTATTCTCCTTGTGGAGTAGGGGGTCACCATACTAGTTACAACTGGTTTTAGAAGCTTACCTTGACTGTAGGCCAAGCGCTCCATACTTTCACTATGTGTGATGCCCCACCGGTGGAGGCTCTGAGGGGAATACATCACTGCTGCTCCACGACCCCTTCCAGACTGAAGACGAACTTCTTGTCTCTCGaaaacgCGGGGAATTCTCAGGAggatattatttaaacaaatctgaTCATGTACCTAACATTACATGTATTCAggctttctttaaatataaaaaacgttattttatttagtgacATCCATGGAATTTTGTATTAAAACCCCTCTCCTTCTATGCCTATCTTTAACCAGAAGATGGCAGTGTCTTCCATAAAGAGAAACAAATCTTAAACCGTGTTCATTTGGTCTTTTATCAATTTTGATCTTGCAAAAACACTTCATTAGTAGTGGTGAAGTGGTCTTTCCACAATTAAAGTAGTGTTTTTCTAAGAttcgctttttctttttttaatttgaaaaaggAAAGGTCACAGACAGGCAACATTACCATCATTAAATAATCTCCATTACAATTTTACTTCTTCAATTACTTCGTCTACATTTTTCCGCctctaatttaaaatgaacatccACTTCAGGCTCGATTGAAGATCTTGCACATGCAATCCTCCTTGCAAAGCGTGAAGCTAGTATGTTGAGATGAGAGGGCACCTTTTAATTCATTGTCTTCAAGTGCTTTGCATTAAATTCATACAATTAGTAAAACCTTGGAGGTTTTGAATAGTTGCATGGCTTTCATGccaacaaaacaaatctaaacttatatgtaaataatgaaaaataataaaatattacctgAATGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135989 False 240 lncRNA 0.52 3 8336651 8338053
XR_006252367.1 True 1259 lncRNA 0.38 3 8336295 8338716

Neighbor

gene id symbol gene type direction distance location
hnrnph3 hnrnph3,LOC107563056,LOC107601829,LOC107725497,LOC108438202,LOC107666547 coding upstream 12088 8319498 ~ 8324207 (+)
dna2 LOC107601824,LOC107666538,LOC107725437,LOC107676588,LOC107563052,LOC107743557,LOC107601826 coding upstream 35550 8291171 ~ 8300745 (+)
nfkb2 LOC107725448,LOC107601822,LOC107666457,LOC107743559,LOC107563053,LOC107696896 coding upstream 80197 8238414 ~ 8256098 (+)
zgc:193505 NA coding upstream 111044 8223770 ~ 8225251 (+)
sncga sncga,LOC107601819,LOC107666408,LOC107725452,LOC107743564,LOC107563049,LOC108438198 coding upstream 113668 8215939 ~ 8222627 (+)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552,LOC107563044,LOC107666460 coding downstream 24281 8362997 ~ 8368788 (+)
pik3ap1 LOC107601836,LOC107725474,LOC107666502,LOC107563065,LOC107676601 coding downstream 83231 8421947 ~ 8435924 (+)
LOC122356333 LOC107601782,LOC107666363,LOC107725459,LOC107563040 coding downstream 97904 8436620 ~ 8479074 (+)
khdrbs2 khdrbs2,LOC107743545,LOC107666564,LOC107676606,LOC108443734 coding downstream 162743 8501459 ~ 8555403 (+)
il22ra2 LOC107666403,LOC107725447,LOC107601806,LOC107676596,LOC107552930,LOC107743540 coding downstream 305939 8644655 ~ 8647451 (+)
G91839 NA non-coding upstream 19883 8313114 ~ 8316412 (+)
G91836 NA non-coding upstream 20839 8309278 ~ 8315456 (+)
G91843 NA non-coding upstream 27376 8305568 ~ 8308919 (+)
G91842 NA non-coding upstream 30915 8304948 ~ 8305380 (+)
G91829 si:ch211-150i13.1,LOC107725451,LOC107743558,LOC107563050,LOC107696897 non-coding upstream 53708 8282155 ~ 8282587 (+)
G91855 NA non-coding downstream 4408 8343124 ~ 8347157 (+)
G91867 NA non-coding downstream 47152 8385868 ~ 8386384 (+)
G91863 LOC107725442,LOC107666570 non-coding downstream 71252 8409968 ~ 8413781 (+)
G91944 NA non-coding downstream 140727 8479443 ~ 8481992 (+)
G91991 NA non-coding downstream 246641 8585357 ~ 8586003 (+)
G91833 slc37a1 other upstream 25471 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 449605 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 497350 7836180 ~ 7838945 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other upstream 548988 7771560 ~ 7787307 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other upstream 1189077 7093144 ~ 7147218 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other downstream 327551 8666267 ~ 8683052 (+)
sf3b5 sf3b5,LOC107601807 other downstream 400320 8739036 ~ 8740095 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 687227 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 742132 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 822801 9161517 ~ 9164114 (+)

Expression


Co-expression Network