sf3b5 (sf3b5,LOC107601807)


Basic Information

Item Value
gene id sf3b5
gene name sf3b5,LOC107601807
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8739036 ~ 8740095 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136262
GAGTAACTCCTTCCGCTCCGCGTCTCAGCCGGATTCTCCGCCCAGCCGCGAAGCTAACAACACTTATAAAAGACCACATCACTTACTTCCTTCATAGTTTACTCAGTTTTTACTTTAGaaACACAGTTGAAGATGACGGACCGTTATAACATCCACAGTCAGCTGGAGCATCTGCAGTCGAAGTACATCGGCACGGGTCACGCAGACACCAGCAAATGGGAATGGCTGGTTAACCAACACAGAGACTCATACTGCTCCTACATGGGCCATTTTGACCTTCTCAATTACTTTGCCGTCGCTGAGAACGAGAGCAAGGCTCGGGTCCGCTTTAACCTGATGGAGAAGATGCTGCAGCCGTGTGGTCCGCCAGCTGACAAACCTGAAGATGCTTAGGGTCTTTTTGACTGGATGTTTTATGTTCATTCAGTGCTGGGAGATCAAATGTAGAGACCCCGGACTCATGGGGGGTTGTGGGCGATCTTTGAATCCTCATGACTGGTTcacaaacaatgttttgttctttttttatgatattttgtatAGGTTGTTGAACTACAAGTGTGTTTGAAGAAAATAAAGTTGATATCCAAT
>XM_043255697.1
TTGTCTGCTCCAATGTTTTCCACAGCGACGGGTTTCTGAGTAACTCCTTCCGCTCCGCGTCTCAGCCGGATTCTCCGCCCAGCCGCGAAGCTAACAACACTTATAAAAGACCACATCACTTACTTCCTTCATAGTTTACTCAGTTTTTACTTTAGaaACACAGTTGAAGATGACGGACCGTTATAACATCCACAGTCAGCTGGAGCATCTGCAGTCGAAGTACATCGGCACGGGTCACGCAGACACCAGCAAATGGGAATGGCTGGTTAACCAACACAGAGACTCATACTGCTCCTACATGGGCCATTTTGACCTTCTCAATTACTTTGCCGTCGCTGAGAACGAGAGCAAGGCTCGGGTCCGCTTTAACCTGATGGAGAAGATGCTGCAGCCGTGTGGTCCGCCAGCTGACAAACCTGAAGATGCTTAGGGTCTTTTTGACTGGATGTTTTATGTTCATTCAGTGCTGGGAGATCAAATGTAGAGACCCCGGACTCATGGGGGGTTGTGGGCGATCTTTGAATCCTCATGACTGGTTcacaaacaatgttttgttctttttttatgatattttgtatAGGTTGTTGAACTACAAGTGTGTTTGAAGAAAATAAAGTTGATATCCAATCACaaa

Function

symbol description
sf3b5 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and precatalytic spliceosome. Orthologous to human SF3B5 (splicing factor 3b subunit 5).

NR:

description
splicing factor 3B subunit 5-like

GO: NA

KEGG:

id description
K12832 SF3B5, SF3B10; splicing factor 3B subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU136262 False 591 TUCP 0.46 2 8739073 8740089
XM_043255697.1 True 634 mRNA 0.46 2 8739036 8740095

Neighbor

gene id symbol gene type direction distance location
oprm1 oprm1,LOC107676562,LOC107601844,LOC107725432,LOC107743618,LOC107666379,LOC107552929 coding upstream 4078 8721028 ~ 8734958 (+)
il22ra2 LOC107666403,LOC107725447,LOC107601806,LOC107676596,LOC107552930,LOC107743540 coding upstream 91585 8644655 ~ 8647451 (+)
khdrbs2 khdrbs2,LOC107743545,LOC107666564,LOC107676606,LOC108443734 coding upstream 183633 8501459 ~ 8555403 (+)
LOC122356333 LOC107601782,LOC107666363,LOC107725459,LOC107563040 coding upstream 259962 8436620 ~ 8479074 (+)
pik3ap1 LOC107601836,LOC107725474,LOC107666502,LOC107563065,LOC107676601 coding upstream 303112 8421947 ~ 8435924 (+)
agt agt,LOC107666501,LOC107601848,LOC107725476,LOC107676582,LOC107552950,LOC107743538 coding downstream 39060 8779155 ~ 8782768 (+)
pgbd5 pgbd5,LOC107725485,LOC107552948,LOC107743535 coding downstream 51061 8791156 ~ 8807527 (+)
abcb10 abcb10,LOC107666478,LOC107725469,LOC107601852,LOC107676605,LOC107743532,LOC107552914 coding downstream 152898 8892993 ~ 8900282 (+)
acta1b act2,actc1a,LOC105907633,LOC107678759,LOC108430668 coding downstream 161455 8901550 ~ 8905011 (+)
ccsapb LOC107725482,LOC107601854,LOC107666447,LOC107676587,LOC107552946,LOC107743530 coding downstream 165791 8905886 ~ 8909793 (+)
G91995 NA non-coding upstream 146382 8591208 ~ 8592654 (+)
G91991 NA non-coding upstream 153033 8585357 ~ 8586003 (+)
G91944 NA non-coding upstream 257044 8479443 ~ 8481992 (+)
G91863 LOC107725442,LOC107666570 non-coding upstream 325255 8409968 ~ 8413781 (+)
G91867 NA non-coding upstream 352652 8385868 ~ 8386384 (+)
G92034 phactr2,LOC107666519,LOC107601847 non-coding downstream 12372 8752467 ~ 8753884 (+)
G92036 phactr2,LOC107601847,LOC107666519 non-coding downstream 14624 8754719 ~ 8757847 (+)
G92042 NA non-coding downstream 42913 8783008 ~ 8783630 (+)
G92045 NA non-coding downstream 46500 8786595 ~ 8786864 (+)
G92046 NA non-coding downstream 46893 8786988 ~ 8787849 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 55984 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 428212 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 852346 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 900091 7836180 ~ 7838945 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other upstream 951729 7771560 ~ 7787307 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 285848 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 340753 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 421422 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 690083 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1465018 10205113 ~ 10249725 (+)

Expression


Co-expression Network