G92034 (phactr2,LOC107666519,LOC107601847)


Basic Information

Item Value
gene id G92034
gene name phactr2,LOC107666519,LOC107601847
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8752467 ~ 8753884 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136265
TCACTAGTTTACAGCCGATCTGCTGCCGTAGCTCCTGTCGCTCCGTTTCTGAGGTCCGTGGGAGAATGTTCTTCTCTTCTAGCTCCTTCTTGCTGGGCCTGTTACCAAGTTTGATGGCAAGTGTGTCCTTACGGCGAATTTTGCTGGCAAGTgagCTAGAGGTATactcatcatcctcatcttcctcttcatcatccTTGTAGAGTATAGGTCCATCTGAATCGGAGTCGTTGGCCTGATTTTCTCGAACGGAGTCAGGAATGACGGTCACATCTGGATTTTCCACATTGACAGTTTGTTGTCTCTCTCCCTCATCGGTCCCAACAA

Function

symbol description
phactr2 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Human ortholog(s) of this gene implicated in Parkinson's disease and multiple sclerosis. Orthologous to human PHACTR2 (phosphatase and actin regulator 2).

NR:

description
PREDICTED: phosphatase and actin regulator 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136265 True 327 lncRNA 0.49 2 8752467 8753884

Neighbor

gene id symbol gene type direction distance location
oprm1 oprm1,LOC107676562,LOC107601844,LOC107725432,LOC107743618,LOC107666379,LOC107552929 coding upstream 17509 8721028 ~ 8734958 (+)
il22ra2 LOC107666403,LOC107725447,LOC107601806,LOC107676596,LOC107552930,LOC107743540 coding upstream 105016 8644655 ~ 8647451 (+)
khdrbs2 khdrbs2,LOC107743545,LOC107666564,LOC107676606,LOC108443734 coding upstream 197064 8501459 ~ 8555403 (+)
LOC122356333 LOC107601782,LOC107666363,LOC107725459,LOC107563040 coding upstream 273393 8436620 ~ 8479074 (+)
pik3ap1 LOC107601836,LOC107725474,LOC107666502,LOC107563065,LOC107676601 coding upstream 316543 8421947 ~ 8435924 (+)
agt agt,LOC107666501,LOC107601848,LOC107725476,LOC107676582,LOC107552950,LOC107743538 coding downstream 25271 8779155 ~ 8782768 (+)
pgbd5 pgbd5,LOC107725485,LOC107552948,LOC107743535 coding downstream 37272 8791156 ~ 8807527 (+)
abcb10 abcb10,LOC107666478,LOC107725469,LOC107601852,LOC107676605,LOC107743532,LOC107552914 coding downstream 139109 8892993 ~ 8900282 (+)
acta1b act2,actc1a,LOC105907633,LOC107678759,LOC108430668 coding downstream 147666 8901550 ~ 8905011 (+)
ccsapb LOC107725482,LOC107601854,LOC107666447,LOC107676587,LOC107552946,LOC107743530 coding downstream 152002 8905886 ~ 8909793 (+)
G91995 NA non-coding upstream 159813 8591208 ~ 8592654 (+)
G91991 NA non-coding upstream 166464 8585357 ~ 8586003 (+)
G91944 NA non-coding upstream 270475 8479443 ~ 8481992 (+)
G91863 LOC107725442,LOC107666570 non-coding upstream 338686 8409968 ~ 8413781 (+)
G91867 NA non-coding upstream 366083 8385868 ~ 8386384 (+)
G92036 phactr2,LOC107601847,LOC107666519 non-coding downstream 835 8754719 ~ 8757847 (+)
G92042 NA non-coding downstream 29124 8783008 ~ 8783630 (+)
G92045 NA non-coding downstream 32711 8786595 ~ 8786864 (+)
G92046 NA non-coding downstream 33104 8786988 ~ 8787849 (+)
G92047 NA non-coding downstream 35113 8788997 ~ 8789201 (+)
sf3b5 sf3b5,LOC107601807 other upstream 12372 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 69415 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 441643 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 865777 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 913522 7836180 ~ 7838945 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 272059 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 326964 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 407633 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 676294 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1451229 10205113 ~ 10249725 (+)

Expression


Co-expression Network