G92036 (phactr2,LOC107601847,LOC107666519)


Basic Information

Item Value
gene id G92036
gene name phactr2,LOC107601847,LOC107666519
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8754719 ~ 8757847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136267
CTGTGTCTGGTCTGCCACTGCCCTCTCTTTCTCCGTTACACTCTCTGCGCTCACAGGCTGCCCTAAAGTGTCCAAAGGAAGTCCATTTGAAGATCCAGCGAAGGACGTTTCCTCTGTGGTTTGATTAACATAAGGTTGCTTTTTGTCCTTCTCTGCAGACGACTCCGAGAGACGACTGGCACCCTTCCCATTCTGAGATGTCTCCTCAGCCTTCTCAATATTGGAGGtcacttcttttttcttttggtccTTTTTAGAAGAGCTTTCCGTGGTCTCTGACGAGATTTTGGAAGAGGGCCGTGGTGACCTGGAAGGTTCGTTTTTCTTGGCAGACTTGGGTTGCGCTTCTAAGCTGTTGTTCTTTGGGGTCTTTGAGCTGGTCAATAAAGAAGATTGTCCTGAGGCCTGAGAGGAACTCTTGGATGTGCCTGCAGTTTTCTTAGGATTCGAAGGCTTAGCTTCTGGTGTTTCAATGTCTACTTTGACCTTTTCAGTAACTCCACTGGGCACTGCATGGCCATTCAAAGTCTCAGTGTTCAAAGG

Function

symbol description
phactr2 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Human ortholog(s) of this gene implicated in Parkinson's disease and multiple sclerosis. Orthologous to human PHACTR2 (phosphatase and actin regulator 2).

NR:

description
PREDICTED: phosphatase and actin regulator 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136267 True 543 lncRNA 0.48 2 8754719 8757847

Neighbor

gene id symbol gene type direction distance location
oprm1 oprm1,LOC107676562,LOC107601844,LOC107725432,LOC107743618,LOC107666379,LOC107552929 coding upstream 19761 8721028 ~ 8734958 (+)
il22ra2 LOC107666403,LOC107725447,LOC107601806,LOC107676596,LOC107552930,LOC107743540 coding upstream 107268 8644655 ~ 8647451 (+)
khdrbs2 khdrbs2,LOC107743545,LOC107666564,LOC107676606,LOC108443734 coding upstream 199316 8501459 ~ 8555403 (+)
LOC122356333 LOC107601782,LOC107666363,LOC107725459,LOC107563040 coding upstream 275645 8436620 ~ 8479074 (+)
pik3ap1 LOC107601836,LOC107725474,LOC107666502,LOC107563065,LOC107676601 coding upstream 318795 8421947 ~ 8435924 (+)
agt agt,LOC107666501,LOC107601848,LOC107725476,LOC107676582,LOC107552950,LOC107743538 coding downstream 21308 8779155 ~ 8782768 (+)
pgbd5 pgbd5,LOC107725485,LOC107552948,LOC107743535 coding downstream 33309 8791156 ~ 8807527 (+)
abcb10 abcb10,LOC107666478,LOC107725469,LOC107601852,LOC107676605,LOC107743532,LOC107552914 coding downstream 135146 8892993 ~ 8900282 (+)
acta1b act2,actc1a,LOC105907633,LOC107678759,LOC108430668 coding downstream 143703 8901550 ~ 8905011 (+)
ccsapb LOC107725482,LOC107601854,LOC107666447,LOC107676587,LOC107552946,LOC107743530 coding downstream 148039 8905886 ~ 8909793 (+)
G92034 phactr2,LOC107666519,LOC107601847 non-coding upstream 835 8752467 ~ 8753884 (+)
G91995 NA non-coding upstream 162065 8591208 ~ 8592654 (+)
G91991 NA non-coding upstream 168716 8585357 ~ 8586003 (+)
G91944 NA non-coding upstream 272727 8479443 ~ 8481992 (+)
G91863 LOC107725442,LOC107666570 non-coding upstream 340938 8409968 ~ 8413781 (+)
G92042 NA non-coding downstream 25161 8783008 ~ 8783630 (+)
G92045 NA non-coding downstream 28748 8786595 ~ 8786864 (+)
G92046 NA non-coding downstream 29141 8786988 ~ 8787849 (+)
G92047 NA non-coding downstream 31150 8788997 ~ 8789201 (+)
G92048 NA non-coding downstream 31884 8789731 ~ 8791052 (+)
sf3b5 sf3b5,LOC107601807 other upstream 14624 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 71667 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 443895 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 868029 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 915774 7836180 ~ 7838945 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 268096 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 323001 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 403670 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 672331 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1447266 10205113 ~ 10249725 (+)

Expression


Co-expression Network