G92108 (erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597)


Basic Information

Item Value
gene id G92108
gene name erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9050367 ~ 9097905 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136358
aaaaaaacgtaaaaAAAAAAACTCCAGGTCATTCATGTCTCTTTTCCTGAGAGATAGTACTAATAGACACTATTCAAAGCCTTACTTGGATGGTtcgatttaatgcattattattattgttattatGAGGTCTTTGATGCCTAGTTTGATTCTTAAAGAGCACCGGCTTCCCCTAGTGGTGAAGTTTTTTAGGCTTCAGAAAATCATCTAGCATGCAGTAATATATTGTTACAACATCTGATCATTAATGCATTTACCCATCAAATAGTGTCTAATAATACAGCAGCCCTTATTGTTACTGAATTCCCTTTGAAATAAACTCCTTCCAGTAATGACAAAACAAGCAAGTTTAACTAAAATCATAAAGGCATTTTCAGTCATAAAGCAACAGACTCAACTATATAGAATCCATTAGCTATCCATCTCGTAGCATTTCAAAGGCTGGAGCCCTGGATCAAAGCTTTGACGTCTTATGAAACTTTATGAAAGCCACATACCCTTGTTCAGTGTGACACCTTCTAAGAACCAACAATTCAAAAACAGGCACAGGGCACCAACAAACTAACACACTACACAACACTATACCAAACCAACTATTTCtgacattatattaaattaaactcacACCAAAGTATTCAGGTGTCAAAATTCTCAATCACAGATCATTAAGAAACTAGCAGggatgattttaaaacatttgattcTTACACAGAGATGTAAAAGCCACTGATCTCTGCAGATGTGGCTGGACTAAATTAAGATTTTAGTGATAATGAAGTTAGTGGTGATGGAAATGAAGGTTTTATACAGGGATGGTTTacctaaaaattacaattctgtcatcagaTACTTACCCTCAAGTTGCCATGAACAGCGTGACTACCTTTTTTCAgtagaaaaaagttttaatgttaaataaaaaactgacaTGAGGgcgaataaataatgacagaatttaaactTGATGCTAGGATGAAGTATCTTTTAAACAACATATGAATGAAAAGTAGATGACAAGTTTTGGCTACAAAATGAGTTTTATCTGATGGTAACAGCATTGGCCATCGCCTTTGATCTCAATTAGTGTGATGCCTTATAATTCCAGTTATGTAAAAGACAACACATAAAAGGTAAACCTCGAAATGTTCACATACTTCACACAGATGCATCTGCCAAGTAATTAGCATGAATTTGCAAAACAAGCGAAAGTTGAGAGCAAAAAAAGCGGGAAAAAAAGCATGCTGATGTGAGAGTCAGGGAGAGGATTTGGATCGCTTCAATTCGACCTGGCAATATTCAGTAGCACAGTTCCTGGACATTCCTTTTTAGTCCACAAGTGACTGCTGGAAAACCACAGGCTCTGTGTGTCAGTCTCCTCAGCTGACTGACTCGAAGCACAGTTAGCCAAGCACCCAACCCCACTGCAGAAGAAGAGTGAAAAGTATCCATGTCAGCATGCCTCACAAGCACCCATGCCCCacaaagagatagagagagagagagagagaaacagcagaGGAAGAGGGGGTGGACAGCTCTCAGGCCCCTCAGTGGATTTCTGTGGCTTTGGGCTTAGAGGCTTTCTTAAGACTCTCTTTCATACTCAGGGCCTCCAGCTGCTCGGCCGAGTCTGCTGCACCCTGGCCTGCGGTCGGACGGGAGGCACTGTTGTCTACAAACATGTTTGGGATGTCTTGACCGAAGTAGATCTTGCTGTTTGCGGCGATAGCCTGATATTTCATCAGTTCTAGATACTCTGGTGTCAGCTTCAG
>TU136359
GTCGTTTTAATGGTATCAAAATAGGTTTTATTTCACAGAACTGAACATTGtcaaaattttataaattttgcatataaatgttttaaaattaggAACTTAAATTATGCTGacataaaaaaagtgacattcacagagtgggtttattccAGGGCAGTCAAGTTCTGTCCTCTCTTATTTAATCAGCCACAAGAATCACAGAAAAAGCTTTGCGAATTGCTTCAAAACTTTTGAGACAATTAAACTCTCTGAAGGAAAAGAACAAAAGTCAATTTTAAGGAGAAATGGGAGAAGCCtaactgtattaaataaatgcatgtctCTTTAATGGAAAAGTTATGTAGAGGATGTAAGACTATGTGCTGTGACAGATAGATATACACAGACAACATGACCTTATATCTGATTTTACAACTTATATTTGATGTAGGGTGAAAAAAACTCCAGGTCATTCATGTCTCTTTTCCTGAGAGATAGTACTAATAGACACTATTCAAAGCCTTACTTGGATGGTtcgatttaatgcattattattattgttattatGAGGTCTTTGATGCCTAGTTTGATTCTTAAAGAGCACCGGCTTCCCCTAGTGGTGAAGTTTTTTAGGCTTCAGAAAATCATCTAGCATGCAGTAATATATTGTTACAACATCTGATCATTAATGCATTTACCCATCAAATAGTGTCTAATAATACAGCAGCCCTTATTGTTACTGAATTCCCTTTGAAATAAACTCCTTCCAGTAATGACAAAACAAGCAAGTTTAACTAAAATCATAAAGGCATTTTCAGTCATAAAGCAACAGACTCAACTATATAGAATCCATTAGCTATCCATCTCGTAGCATTTCAAAGGCTGGAGCCCTGGATCAAAGCTTTGACGTCTTATGAAACTTTATGAAAGCCACATACCCTTGTTCAGTGTGACACCTTCTAAGAACCAACAATTCAAAAACAGGCACAGGGCACCAACAAACTAACACACTACACAACACTATACCAAACCAACTATTTCtgacattatattaaattaaactcacACCAAAGTATTCAGGTGTCAAAATTCTCAATCACAGATCATTAAGAAACTAGCAGggatgattttaaaacatttgattcTTACACAGAGATGTAAAAGCCACTGATCTCTGCAGATGTGGCTGGACTAAATTAAGATTTTAGTGATAATGAAGTTAGTGGTGATGGAAATGAAGGTTTTATACAGGGATGGTTTacctaaaaattacaattctgtcatcagaTACTTACCCTCAAGTTGCCATGAACAGCGTGACTACCTTTTTTCAgtagaaaaaagttttaatgttaaataaaaaactgacaTGAGGgcgaataaataatgacagaatttaaactTGATGCTAGGATGAAGTATCTTTTAAACAACATATGAATGAAAAGTAGATGACAAGTTTTGGCTACAAAATGAGTTTTATCTGATGGTAACAGCATTGGCCATCGCCTTTGATCTCAATTAGTGTGATGCCTTATAATTCCAGTTATGTAAAAGACAACACATAAAAGGTAAACCTCGAAATGTTCACATACTTCACACAGATGCATCTGCCAAGTAATTAGCATGAATTTGCAAAACAAGCGAAAGTTGAGAGCAAAAAAAGCGGGAAAAAAAGCATGCTGATGTGAGAGTCAGGGAGAGGATTTGGATCGCTTCAATTCGACCTGGCAATATTCAGTAGCACAGTTCCTGGACATTCCTTTTTAGTCCACAAGTGACTGCTGGAAAACCACAGGCTCTGTGTGTCAGTCTCCTCAGCTGACTGACTCGAAGCACAGTTAGCCAAGCACCCAACCCCACTGCAGAAGAAGAGTGAAAAGTATCCATGTCAGCATGCCTCACAAGCACCCATGCCCCacaaagagatagagagagagagagagagaaacagcagaGGAAGAGGGGGTGGACAGCTCTCAGGCCCCTCAGTGGATTTCTGTGGCTTTGGGCTTAGAGGCTTTCTTAAGACTCTCTTTCATACTCAGGGCCTCCAGCTGCTCGGCCGAGTCTGCTGCACCCTGGCCTGCGGTCGGACGGGAGGCACTGTTGTCTACAAACATGTTTGGGATGTCTTGACCGAAGTAGATCTTGCTGTTTGCGGCGATAGCCTGATATTTCATCAGTTCTAGATACTCTGGTGTCAGCTTCAG

Function

symbol description
erlin1 Predicted to enable cholesterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to act upstream of or within cholesterol metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 62. Orthologous to human ERLIN1 (ER lipid raft associated 1).

NR:

description
PREDICTED: erlin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136358 False 1772 lncRNA 0.40 3 9050367 9097905
TU136359 True 2189 lncRNA 0.38 2 9095697 9097905

Neighbor

gene id symbol gene type direction distance location
echs1 echs1,LOC107601864,LOC107666378,LOC107676592,LOC107743519,LOC107725439 coding upstream 26681 9021295 ~ 9023686 (+)
lgalslb lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 29484 9013992 ~ 9020883 (+)
sertad2b sertad2,sertad2b,LOC107666512,LOC107676574,LOC107743523,LOC107725465 coding upstream 42023 8975089 ~ 9008344 (+)
rab1ab rab1a,LOC107676578,LOC107666439,LOC103035225,LOC107725478,LOC107601860,LOC105005759 coding upstream 93670 8950895 ~ 8956697 (+)
zgc:153169 zgc:153169,LOC107725444,LOC107666437,LOC107601788,LOC107552913 coding upstream 99785 8947750 ~ 8950582 (+)
cfap43 cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315 coding downstream 5128 9103033 ~ 9116177 (+)
col17a1b LOC107667282,LOC107743515 coding downstream 22443 9120348 ~ 9137429 (+)
si:ch211-223p8.8 LOC107552909,LOC107743613,LOC107552922,LOC107667280 coding downstream 61742 9159647 ~ 9160722 (+)
dusp13a dusp13a,LOC107725429,LOC107666542,LOC107601810,LOC107743611,LOC107552920,LOC107671562,LOC108426746 coding downstream 68473 9166378 ~ 9169605 (+)
LOC122356812 LOC107725429 coding downstream 71374 9169279 ~ 9170253 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 84778 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 153458 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 259315 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 261166 8788997 ~ 8789201 (+)
G92046 NA non-coding upstream 262518 8786988 ~ 8787849 (+)
G92111 NA non-coding downstream 42312 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 166159 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 352541 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 381516 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 473084 9570989 ~ 9583671 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 22458 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 310272 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 367315 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 739543 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 1163677 7858698 ~ 7886690 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 63612 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 332273 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1107208 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1318335 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1866950 10964855 ~ 10968914 (+)

Expression


Co-expression Network