spef1 (zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614)


Basic Information

Item Value
gene id spef1
gene name zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9080848 ~ 9089121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136364
CTTTCATATACCCGAGGAGACGGTGAAGAATATTGCAGTCAGCACAGCAGGCTACATCGAACCAGTCCTTTGCTCTCTGAGAGAAAAGATAGAGGAGAAACGAGCGGGGAAACAATTAGATGGAACACAGgACTTAGAATATTACAGCACTACAACTGGACAGTCAAGACCAGATAAGCATCTGATGGTTTTTGGAGCCACTCATGCCACCAATCCAGCCACTGTGAAGAAGAAAGACAAAGTCAGGTACTGAGCTGTAA
>TU136365
CTTTCATATACCCGAGGAGACGGTGAAGAATATTGCAGTCAGCACAGCAGGCTACATCGAACCAGTCCTTTGCTCTCTGAGAGAAAAGATAGAGGAGAAACGAGCGGGGAAACAATTAGATGGAACACAGgACTTAGAATATTACAGCACTACAACTGGACAGTCAAGACCAGATAAGCATCTGATGGTTTTTGGAGCCACTCATGCCACCAATCCAGCCACTGTGAAGAAGAAAGACAAAGTCAGTGCCGCTGCAGCCTTGAGACCAAATGTGGATCCAGG
>XM_043254779.1
TCCTAATACCTGCACCTTTGTGATTGTCGCGGGTTTCAATCGCGAAGAAGCTTGTTTCGAATGATGGACGGGCCTAAACAATTAGACGAGGAAACTTTGCAAGACCTCTACGCGTGGATAGACAAGTTACCACTCTCGAGACCCAAAAGGAATATAACAAGAGATTTTAGCGATGGAGTTATGACTGCAGAAGTAGTGAAGCATTTCTTCCCTAAGCTGGTGGAGCTGCACAACTACACGCCCGCGCATTCCACGCAACAGAAGCTGAGTAACTGGAGCACCCTCAACAGAAAAGTTTTCTCCAAGCTGAACTTTCATATACCCGAGGAGACGGTGAAGAATATTGCAGTCAGCACAGCAGGCTACATCGAACCAGTCCTTTGCTCTCTGAGAGAAAAGATAGAGGAGAAACGAGCGGGGAAACAATTAGATGGAACACAGgACTTAGAATATTACAGCACTACAACTGGACAGTCAAGACCAGATAAGCATCTGATGGTTTTTGGAGCCACTCATGCCACCAATCCAGCCACTGTGAAGAAGAAAGACAAAGTCAGTGCCGCTGCAGCCTTGAGACCAAATGTGGATCCAGGTGTTCGTTTGCTCTTGGAGGAAAAGGAGCAAACCATTTTGGCTTTACAGGAGACTGTTGAGATTTTACAGATTAAGGTAGACCGATTGGAGCATCTTGTGCATCTTAAGGATCTACGCATCGAAGACTTGACAAAGCACTTAGAGCGATATAAGGCACGCAACTCGTGATCTAATTATTAGCATATAGATCCACCATCAGAATTTAATTTGAGGAAAAGCATACGATATGCATACTTAAGACTCATAATAAACTGTTACAGAGAAATTAAATAATCTAATATTCCTCACCTGTTTTCTGAACTGTGATTGTTGGCACTCAGAAAAAAAGCTCTGATGTCAATAACTAGCATATTTTATCTGCTGAGACCATCTACAGGATTTTATGTACACTTGAGCCCACCAGACTTTGGCACTAAAGTTTTTGTGGGGAGATTTCAACAGTTCTGTGGAAGATTTACTTTAGTCTGAACAGTAAGTGCAATTACTatgttatactgtaaaaaaaatttaaagacgACTTAACTTccaaaacaaagggaagactgAGGAGGTTCATTCAAAACAATACGGCTACATAATCAATGTAACACAAATTAGAAAGTcggcatgaaatcaaaattattatttttttaattaatgtgcccttataatctttaatcaaaacGTCAACCATCTCCTCCCCTCTTTCGGTTACGAGCGATGGCACAAGGGCGTGACTATCGGTGTATTCAGATCTGCTTCCATTTTGTTAGCAACACTCTGGAAATCTGTCTATCTTCCAACGATCCAATCAATTACCGTATGACGAAATCAAGAAAAATCAATTTCTGCGTGTTTCACAATCAGGCAATCAAAATGATCCCCCTGCCCTTAAACCTACCCTCACTATGACGTCAGCCAATCAGGTAATATGGTGTAAAACGCCCTGATTTGGTAACGCCCATTACATCGCCTGCAGAGACATATTCTTGGTTTCACTCGGATATATGTCacagtaaagaaaaaagcaCAATCTCAAAACTTCCTTTTCATGCTGacataaataaagtattattttttgttgttatgggcACATCAgaagttttattgcatctcatgactatgttgtttatgaaataatgtttgtgtCCGTgcgtgtaaaataaaaaaaaatgacgatttatatataatcatgtgtgACTGTAGTGACACTAGCTGAACTAGTGACTAGTTGtagctggaataataataaagtagctgtaaaaatatttgcctgctgaaactgaaatgtatacatcttcATCGTGACTAGATAGACACTCAATTTGTCTTTAATATAACTGACACATTAGATGTGATTCACTTCATGGTAAAAATCCTGTCAGATCCTTGGAGTGAATGTACAGGTCGGCCAATCTGGTTTCTTCTAGTTAAGCTTTGTTATGGACGGTGGATGGTGCTCAGGTGATGACCGAGTAGATCTGATGTCACATTTTTACGGAAGTCACAGCAGCTCGTGAAAAATCACAGCCACGTTATACACACTGTGTGCAGTTAGgaaatttcagatttgacaaTATGAGACATTTTGAGTTTCCTCAAGTTTGGACCAAGTTGTTTTCTCAAATTAAGTCACTGAGTAAAGTCACATGTCTCTTTTTTGAACAGCTAATAAACTTTATTATCTTAAATGTGGACGAGattaatgtttttctgtatctttgcagttttttgttttttttttacaaacaatagACATTAATGGATAagttaataacaataatcctataacagtaactgcataatttattcatgctgaAATGCTTGCTTGGAACTCACAAAGCCTGAACATTTCAATAAGATGAAATTATTGTAGGTCTGACAAGGGTCAGTTTATgtagtttaaagaaaaatgcgCAGTtccatttttacagtgcagtatTTCCATTCATgtagaattatttaatattatttttagccaCTTTTATGTAACAGTAGCTGCTTTTCCACTGCAAGGCTGATAATggatttaattcaaattcaagcttttgtgtattttgacaGCCTACATCATAGATGGACACTTCTGTGATTTAGGTTAAAAATGTTATCGTTATCTACAGTACATGCACAGTTCGGTGGGTGGTGCTAAAtaggcagtgatgtagaagcaggtgCTGATCTTCTTCTATGGAGGTGGGGTTTAGCCACACCATTACATCATAAGGTGTCACACTctatataatattcattttttggtTTCAATATAAGCTGTTTGTTCTCAAActtacagaatgttttttatagTAAAGTGACCTCTTAtatgtcaaaagatcaaggGAATTTTGATTTCTTAGTTCATGTcacctttaaataataaaataaaatatttaattgttttctaataataatttcttagGCTTCATTGTATTTTGGACTTTATctgagcaaaacattttttcataattcacATAATATTATTAAGACCTGTAACATGGTCTGCCATGTTTGGGGTTTATGTTAGACTGAATGTACAgagtttaaaattaatttcattctGACCTCAGCATGGAAACTGATgcttaaaatactaaaatatccTATGCAGACGTTTATCCggaaatctgtgtttttgtggtcAAGTTCAACTTCTCCTTTACTTAAGAATACATATCCTAACTCCTTTGACACAGGAAACATGCATTAACAGTGCATGTCAGACTGTGATCAgttgatagaagcaggtcacttataactctaatgagagcagtctcagtactaagGCATGGTCTAAATCCTGACTGGAAGTCCTTACAAATACCATTGTTTCTTTAAGAAGGAATATAGTTGTAAATTGTGAGATCTTTTCTagatctttgacagaaaagggaggtTCTGTAAACGTGTTTGGGGGTCAAggtgtggttttttttaatgagaggcTTAACAACAGCCAATTTGAAGGTTTTTGGGGACCTATCCTAATGTCAATGTTGAATAATTATAAACAAGAGAgaatctatgacttctggactttaaatagttttgatgGAATATGGTCTAATAGACATGTTGTTGGTTTAGATggtttaacaagtttgtacaacaGAATGAGTGGAAATTTTCTGCAGGGGATCTATAGCTGACGGCTGCatgtttacaattttatctctaaTAGTATCGatcttggaagtaaagtagttcataaAGTCACTACTGCTGTGATCATGGGGAATGTCAGCACCTGTTGTTATTTCTCATTATTTCTGAGTAAATATCAGGGATTATGTTTAATCAGATctaacagtttttaatgcttttctgtacaaTAGAGTACTTTCccgccaagaaaaaaaattctggtcTAGCGAGTGTGTGCACAGATACTACAGGTTGTGCTAAAAGACCGGCAAAATCCACATATTACCtcctatatatatttacaggatttataatatcactttaaatgtaaataagacTTACACCGCTATTATTACCATACTACGAAAGAgagttgttttgtgtttaaataaatagatccCCATGGACTAACTAACCACTGATGCTGAATTATTGCACACCGCTGTGTACAAATACAAGATTGcttcattcttcattctttcttctgttgattAAGtggttcaacagaagaaagaatgaCGAATGAAGCAATCTtgtattttgatacattttcacACATCGGTGTGCAATAATGTAGGGAGGATGTTTTCTCGTGtattctaaatgtttttctaGACAATGTTATAAGCAGTCATACTTAAAGCCTGTCCTCTGAGAAATACTGAGAATATTGCTATACATTGttgcaacacctccccctttacttTTTGAACGTGACTCATTTTTATAACAG

Function

NR:

description
sperm flagellar protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136364 False 260 lncRNA 0.45 3 9081688 9084026
TU136365 False 282 lncRNA 0.47 4 9081688 9084147
XM_043254779.1 True 4447 mRNA 0.36 7 9080848 9089121

Neighbor

gene id symbol gene type direction distance location
adam8a adam8,LOC107725440,LOC107666510,LOC107743615,LOC107676563 coding upstream 104 9072842 ~ 9080744 (+)
msx3 msx3,LOC107743518,LOC107552925,LOC107601809,LOC107725487,LOC107666509 coding upstream 12104 9066080 ~ 9068744 (+)
echs1 echs1,LOC107601864,LOC107666378,LOC107676592,LOC107743519,LOC107725439 coding upstream 57162 9021295 ~ 9023686 (+)
lgalslb lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 59965 9013992 ~ 9020883 (+)
sertad2b sertad2,sertad2b,LOC107666512,LOC107676574,LOC107743523,LOC107725465 coding upstream 72504 8975089 ~ 9008344 (+)
cfap43 cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315 coding downstream 13912 9103033 ~ 9116177 (+)
col17a1b LOC107667282,LOC107743515 coding downstream 31227 9120348 ~ 9137429 (+)
si:ch211-223p8.8 LOC107552909,LOC107743613,LOC107552922,LOC107667280 coding downstream 70526 9159647 ~ 9160722 (+)
dusp13a dusp13a,LOC107725429,LOC107666542,LOC107601810,LOC107743611,LOC107552920,LOC107671562,LOC108426746 coding downstream 77257 9166378 ~ 9169605 (+)
LOC122356812 LOC107725429 coding downstream 80158 9169279 ~ 9170253 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 115259 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 183939 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 289796 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 291647 8788997 ~ 8789201 (+)
G92046 NA non-coding upstream 292999 8786988 ~ 8787849 (+)
G92111 NA non-coding downstream 51096 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 174943 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 361325 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 390300 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 481868 9570989 ~ 9583671 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 52939 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 340753 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 397796 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 770024 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 1194158 7858698 ~ 7886690 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 72396 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 341057 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1115992 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1327119 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1875734 10964855 ~ 10968914 (+)

Expression


Co-expression Network