zgc:153981 (zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808)


Basic Information

Item Value
gene id zgc:153981
gene name zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9161517 ~ 9164114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136388
CCAAACAGCGTCATAAAGAGCACCTGTTTGTGCGGATCACGGCGTGCCGAACCCGTTATGTATACTGGAGCCTCGGTAAAACAGAAGAAACACATCTCCACGGGCGTTATAGTCTGATCTGGGTCAATTCAGAAGAATGACAACCCAGAAAAATAAACACCCACTCCTAGCCATCAAGGAGTTCGAGAATATCCTGGACACATGCAAACTTGATCTAAATCCAATCGACGAGGTCTGGCCGAACTTGTACATCGGAAACGTggcCATTGCTCAAAATAGAAATGCTTTGAAGAAAATGGGCATCACTCATGTCTTAAATGCTGCTCATTCCAAGCAAGGCAGCATCGGGGACCAGAGTTATTACGGCAATACAATTGTGTATTATGGCATCCCAGCAGAAGACTCTTCATCATTCGATCTCAGTGCATACTTTAAACCAGCTTCTGATTTCATCCACAAAGCCTTGAGGAAGAAGAACGGAAAGGTGCTTATTCATTGCATCATGGGAATGAGTCGGTCTGCCACACTGGTTCTAGCGTACCTTATGCTGCGTCAGCGTCTGACTCTCCGCACCGCCATCCAAACAGTTGTACTGCGAAGAGCAATCTATCCTAACAGGAACTTTTTGAGCCTTCTCCTGGATTTAGACATTCAGCTACAGAGAAAGCGGAGGCTTTGTCCTAttctctgacaaaaaaaaaaacacaaaaatgcacgtttattcattttgtgtaATATAAGAGGTAAGGGGGTAACCACCATCGGTATGTTTACAGTATttatgatatgtatatatatatatatatatatatatatatatatatattgtttcatATAGTAAAACTTGTGCCTTGCAGGTTTAGCCTATGTATAGACCATCTTTGTACTTTTccatacatttacaaagttattaaataatagtttacctaaaaaactttaataatgaatgaaagtttttaatacaatttttttaaaacttcatttaCATTTGACATAGTCATATTAACATAGGTGGCTTTAGTGTACAATGTAGTGTACATGGAAATGAGAATGGTGTTTTTTAAGAAAGTCTGTATTATGTATTCAAGTTGCACTGAACGACAGCACACAAGTGCCACATGCTCCTCACACTGTGAATAATATTTAGCAGCGGAGTCAGTATTCAGCATAGAATACCAAATGAAACAGTATTAAATGATTGaattgtgcttttattattcagCTGCAGAGAAACCCCTCACTGTGAGCAGTACTAGCTTTTACATTGCTTTTGGCAGCCACGTTTGGAGAAATACACGGGCCAAGCACAACACTCTTCTGTTAACTCGATCCAAAAAGCCTTGTTTAAATGACTGAGCAGCACTCGCTGATGTGATTTTAGTgcacctttttgttttaatagcaGAATAATGCGTTTCATTCAGCTCACTGATTCACAGAAGTTCCTTTGTTATCTTGGAGAATATTTAGTGtagaaattaaattagattCTATTGACCATGAGCGGGACAAATATTGAATTTGTTACACTGTTAGATATAACTTCACTAGTGGACTCATGTTCAGATATTTAATACAAACAAGGTGCcaagtaaatgtattatatgtatttgttcaaatgaaataaacccGAAAGTCCTTTGGttgtgcctttttttctttcttaatttctaaaatatatttccacTGATTTCTCATATGCTAACATAATTCTCTATGAAAAGCCACATGCTCCTCCAGCTGCAAATAACAGAGCTCATGCATGTGTCAGTTATAAACTGTACATGACCCTGTCTAGAGTACAACATTATTCATGTGCTTCTGCATTCTTTCCTTTGTGCTTCTTACATCTTCCAGCAGGGTGCAGTGCTG
>XM_043254502.1
TCCGTCGTCGGCGGGGCTCTGAGACTCTCGGTGGTGTCTGGTGACCAAACAGCGTCATAAAGAGCACCTGTTTGTGCGGATCACGGCGTGCCGAACCCGTTATGTATACTGGAGCCTCGGTAAAACAGAAGAAACACATCTCCACGGGCGTTATAGTCTGATCTGGGTCAATTCAGAAGAATGACAACCCAGAAAAATAAACACCCACTCCTAGCCATCAAGGAGTTCGAGAATATCCTGGACACATGCAAACTTGATCTAAATCCAATCGACGAGGTCTGGCCGAACTTGTACATCGGAAACGTggcCATTGCTCAAAATAGAAATGCTTTGAAGAAAATGGGCATCACTCATGTCTTAAATGCTGCTCATTCCAAGCAAGGCAGCATCGGGGACCAGAGTTATTACGGCAATACAATTGTGTATTATGGCATCCCAGCAGAAGACTCTTCATCATTCGATCTCAGTGCATACTTTAAACCAGCTTCTGATTTCATCCACAAAGCCTTGAGGAAGAAGAACGGAAAGGTGCTTATTCATTGCATCATGGGAATGAGTCGGTCTGCCACACTGGTTCTAGCGTACCTTATGCTGCGTCAGCGTCTGACTCTCCGCACCGCCATCCAAACAGTTGTACTGCGAAGAGCAATCTATCCTAACAGGAACTTTTTGAGCCTTCTCCTGGATTTAGACATTCAGCTACAGAGAAAGCGGAGGCTTTGTCCTAttctctgacaaaaaaaaaaacacaaaaatgcacgtttattcattttgtgtaATATAAGAGGTAAGGGGGTAACCACCATCGGTATGTTTACAGTATttatgatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgtttcatATAGTAAAACTTGTGCCTTGCAGGTTTAGCCTATGTATAGACCATCTTTGTACTTTTccatacatttacaaagttattaaataatagtttacctaaaaaactttaataatgaatgaaagtttttaatacaatttttttaaaacttcatttaCATTTGACATAGTCATATTAACATAGGTGGCTTTAGTGTACAATGTAGTGTACATGGAAATGAGAATGGTGTTTTTTAAGAAAGTCTGTATTATGTATTCAAGTTGCACTGAACGACAGCACACAAGTGCCACATGCTCCTCACACTGTGAATAATATTTAGCAGCGGAGTCAGTATTCAGCATAGAATACCAAATGAAACAGTATTAAATGATTGaattgtgcttttattattcagCTGCAGAGAAACCCCTCACTGTGAGCAGTACTAGCTTTTACATTGCTTTTGGCAGCCACGTTTGGAGAAATACACGGGCCAAGCACAACACTCTTCTGTTAACTCGATCCAAAAAGCCTTGTTTAAATGACTGAGCAGCACTCGCTGATGTGATTTTAGTgcacctttttgttttaatagcaGAATAATGCGTTTCATTCAGCTCACTGATTCACAGAAGTTCCTTTGTTATCTTGGAGAATATTTAGTGtagaaattaaattagattCTATTGACCATGAGCGGGACAAATATTGAATTTGTTACACTGTTAGATATAACTTCACTAGTGGACTCATGTTCAGATATTTAATACAAACAAGGTGCcaagtaaatgtattatatgtatttgttcaaatgaaataaacccGAAAGTCCTTTG

Function

symbol description
zgc:153981 Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm.

NR:

description
dual specificity protein phosphatase 13-like isoform X2

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136388 True 1872 TUCP 0.38 4 9161561 9164114
XM_043254502.1 False 1711 mRNA 0.38 3 9161517 9163885

Neighbor

gene id symbol gene type direction distance location
si:ch211-223p8.8 LOC107552909,LOC107743613,LOC107552922,LOC107667280 coding upstream 795 9159647 ~ 9160722 (+)
col17a1b LOC107667282,LOC107743515 coding upstream 24088 9120348 ~ 9137429 (+)
cfap43 cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315 coding upstream 45340 9103033 ~ 9116177 (+)
adam8a adam8,LOC107725440,LOC107666510,LOC107743615,LOC107676563 coding upstream 80773 9072842 ~ 9080744 (+)
msx3 msx3,LOC107743518,LOC107552925,LOC107601809,LOC107725487,LOC107666509 coding upstream 92773 9066080 ~ 9068744 (+)
dusp13a dusp13a,LOC107725429,LOC107666542,LOC107601810,LOC107743611,LOC107552920,LOC107671562,LOC108426746 coding downstream 2264 9166378 ~ 9169605 (+)
LOC122356812 LOC107725429 coding downstream 5165 9169279 ~ 9170253 (+)
ap3m1 LOC107743512,LOC107655430,LOC107726964,LOC107559324,LOC107601875,LOC107666495 coding downstream 174164 9338278 ~ 9342544 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding downstream 226108 9390222 ~ 9397047 (+)
LOC122356357 gsto1,LOC107601880,LOC107726961,LOC107743610,LOC107559317,LOC107655421,LOC107666511 coding downstream 233375 9397489 ~ 9400354 (+)
G92111 NA non-coding upstream 17006 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 63612 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 195928 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 264608 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 370465 8789731 ~ 8791052 (+)
G92147 NA non-coding downstream 99950 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 286332 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 315307 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 406875 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 428305 9592419 ~ 9594277 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 72396 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 133608 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 421422 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 478465 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 850693 8306486 ~ 8310824 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 266064 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1040999 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1252126 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1800741 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 2049412 11213526 ~ 11218175 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005986 zgc:153981 coding NC_007124.7 CM002897.2 24834199 ~ 24837977 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_12434858_12435727 NA coding CI01000012 null 12433898 ~ 12436235 (-)