atoh7 (atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756)


Basic Information

Item Value
gene id atoh7
gene name atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9430178 ~ 9434605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136465
GCGATATGtatcataaaataatgtaaacaaagacTGCAGCGGAGCACGAATAAGAAGGACTGAGGTTatcatattttcacattttagCAGGACCATGGGAGGGCACGATGCTGGCAGCCAGCACCAGTTCACAGGGAttgccaaatattttaattcatacaCCATTACAGGAAGAAGGAATTGCGTTCTGGCCACTTACGCTGGCATTGCTGTCATTTTTCTGTACTTCAAACTGAAACCCAAGAAAAAGAAGGCAATTGCTGCAAAGtgataatgaaaatgatttGTTCTTCTGTGTTTAATTCTGTGTAATCTTTAATTGTCCCAGAGTAAAAACTACATCTGAATGTTAAACAAAGTAAAAGCAACAACCCTGTAATACTGTTATGATTAAACCGTGCTGCTAaaaaaagcattaaaaaaataaatattttgcca
>TU136467
GCGATATGtatcataaaataatgtaaacaaagacTGCAGCGGAGCACGAATAAGAAGGACTGAGGTTatcatattttcacattttagCAGGACCATGGGAGGGCACGATGCTGGCAGCCAGCACCAGTTCACAGGGAttgccaaatattttaattcatacaCCATTACAGGAAGAAGGAATgtgagtatttattaattagtcCATTGCAGTCTATCGAGAAAgcaattttttctttaacattaTCCCCTATAGCCTATAATCTAAGCTTTCTCTggaaattgctttattttaaaaccaacAAGTTTGTAAACTACTGTAAATGTAGTGGTTGCTTGAAAAACAAAGTTCAGTCCAGTTATTGTATGTTAGCGCTACATAGcatactgaaaatataatattttggttCCAGTGCGTTCTGGCCACTTACGCTGGCATTGCTGTCATTTTTCTGTACTTCAAACTGAAACCCAAGAAAAAGAAGGCAATTGCTGCAAAGtgataatgaaaatgatttGTTCTTCTGTGTTTAATTCTGTGTAATCTTTAATTGTCCCAGAGTAAAAACTACATCTGAATGTTAAACAAAGTAAAAGCAACAACCCTGTAATACTGTTATGATTAAACCGTGCTGCTAaaaaaagcattaaaaaaataaatattttgcca
>XM_043254742.1
aacaaagacTGCAGCGGAGCACGAATAAGAAGGACTGAGGTTatcatattttcacattttagCAGGACCATGGGAGGGCACGATGCTGGCAGCCAGCACCAGTTCACAGGGAttgccaaatattttaattcatacaCCATTACAGGAAGAAGGAATGTAATGGTCCTTGTCATCCACCCCTGGTTGATGCAGTGGCCCTGGCCAGATGGTAAGTTATCTATGTTTGTAACGCATGGTTTCAGTGATAGACCAGCCAAAGTTAATTGGAATGTCATTAAAGTTTGAGTTAATGGGGGTTGGGGCTGGGGAGCTAGTTCGAGTGCTCTAGTCCTGCTGTTGGATATGTgtgtttcattaataataatggatGTTTGGATGAAGCAATACGGGTGGGGCTCCACCTGCTGCCACCTGTTAATACTCTATATAAGCATCAGCCATCCCTATGGCAGAGCAGAAGCACTTCTATCTGGATTTACTTCACTACACGAACAAGAGGAACATTGAGTAAATTTTCCACCTCGTTTACGAGACCACCACCGGCCTTTGAGGACCTTTAGCCCCGGAGTCATGAAGCCCCGCAGCCCGAGCTGTGCAGATTCAGGGTCGGAGTCGGACTCCAGAGACCCAGAGAAGTTTGAGAGTGCCATGCGGCGGAGGATGGCGGCCAACGCTcgagagaggaagaggatgcAGGGCCTGAACACCGCATTCGACCGCCTCCGCAAAGTGGTTCCTCAGTGGGGTCAGGACAAGAAACTCTCCAAATATGAGACGCTGCAGATGGCCCTGAGCTACATTATGGCCCTCAACAGAATCCTAAATGATGCCAGCAGACACGCAGCTCCTCAGAAAGACTGGCTGGATCTACAGTTTGACGGCCTACAGCCAGAGACCTATTCTTGCTTTGTGCGCTATAACTCCCCTGTGGAAAATGACTGTATGCACTCCTCCTTCTCCTACCACTACGAAAGCCTTTAAGCTCTCACTGACTGATAAGCAATGGTGTGTTCACTTGTATCTTTCTGAACATAGATACGGCAATATGTTTGTAttactgtgtaatattttatgtttttggttcTGGAAATCAAATGATTAGCTTTATTAGGGTCTCACTCATTCTAGGAGTATAGTTGCTTTAATTGATGCAAAAAGGACGTTTTCTGGGCAActgtagaaaatatttaatcagaCATGTTCGAAGTCAGATGTTTGAGTTTTTCATTACTTTGTATCAAATCTTTTTGTATAGTGCGTTCAATCAAAGCtgcaaaagcattaaaaaaataaatattttgccaAAATAGCAA
>XM_043254743.1
aacaaagacTGCAGCGGAGCACGAATAAGAAGGACTGAGGTTatcatattttcacattttagCAGGACCATGGGAGGGCACGATGCTGGCAGCCAGCACCAGTTCACAGGGAttgccaaatattttaattcatacaCCATTACAGGAAGAAGGAATGTAATGGTCCTTGTCATCCACCCCTGGTTGATGCAGTGGCCCTGGCCAGATGAGCAGAAGCACTTCTATCTGGATTTACTTCACTACACGAACAAGAGGAACATTGAGTAAATTTTCCACCTCGTTTACGAGACCACCACCGGCCTTTGAGGACCTTTAGCCCCGGAGTCATGAAGCCCCGCAGCCCGAGCTGTGCAGATTCAGGGTCGGAGTCGGACTCCAGAGACCCAGAGAAGTTTGAGAGTGCCATGCGGCGGAGGATGGCGGCCAACGCTcgagagaggaagaggatgcAGGGCCTGAACACCGCATTCGACCGCCTCCGCAAAGTGGTTCCTCAGTGGGGTCAGGACAAGAAACTCTCCAAATATGAGACGCTGCAGATGGCCCTGAGCTACATTATGGCCCTCAACAGAATCCTAAATGATGCCAGCAGACACGCAGCTCCTCAGAAAGACTGGCTGGATCTACAGTTTGACGGCCTACAGCCAGAGACCTATTCTTGCTTTGTGCGCTATAACTCCCCTGTGGAAAATGACTGTATGCACTCCTCCTTCTCCTACCACTACGAAAGCCTTTAAGCTCTCACTGACTGATAAGCAATGGTGTGTTCACTTGTATCTTTCTGAACATAGATACGGCAATATGTTTGTAttactgtgtaatattttatgtttttggttcTGGAAATCAAATGATTAGCTTTATTAGGGTCTCACTCATTCTAGGAGTATAGTTGCTTTAATTGATGCAAAAAGGACGTTTTCTGGGCAActgtagaaaatatttaatcagaCATGTTCGAAGTCAGATGTTTGAGTTTTTCATTACTTTGTATCAAATCTTTTTGTATAGTGCGTTCAATCAAAGCtgcaaaagcattaaaaaaataaatattttgccaAAATAGCAA
>XM_043254744.1
GCGATATGtatcataaaataatgtaaacaaagacTGCAGCGGAGCACGAATAAGAAGGACTGAGGTTatcatattttcacattttagCAGGACCATGGGAGGGCACGATGCTGGCAGCCAGCACCAGTTCACAGGGAttgccaaatattttaattcatacaCCATTACAGGAAGAAGGAATTGCGTTCTGGCCACTTACGCTGGCATTGCTGTCATTTTTCTGTACTTCAAACTGAAACCCAAGAAAAAGAAGGCAATTGCTGCAAAGtgataatgaaaatgatttGTTCTTCTGTGTTTAATTCTGTGTAATCTTTAATTGTCCCAGAGTAAAAACTACATCTGAATGTTAAACAAAGTAAAAGCAACAACCCTGTAATACTGTTATGATTAAACCGTGCTGCTAaa
>XM_043254745.1
gtaaacaaagacTGCAGCGGAGCACGAATAAGAAGGACTGAGGTTatcatattttcacattttagGACCATGGGAGGGCACGATGCTGGCAGCCAGCACCAGTTCACAGGGAttgccaaatattttaattcatacaCCATTACAGGAAGAAGGAATTGCGTTCTGGCCACTTACGCTGGCATTGCTGTCATTTTTCTGTACTTCAAACTGAAACCCAAGAAAAAGAAGGCAATTGCTGCAAAGtgataatgaaaatgatttGTTCTTCTGTGTTTAATTCTGTGTAATCTTTAATTGTCCCAGAGTAAAAACTACATCTGAATGTTAAACAAAGTAAAAGCAACAACCCTGTAATACTGTTATGATTAAACCGTGCTGCTAaa

Function

symbol description
atoh7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including positive regulation of neurogenesis; retina layer formation; and swimming behavior. Predicted to be active in nucleus. Is expressed in eye and immature eye. Human ortholog(s) of this gene implicated in persistent hyperplastic primary vitreous. Orthologous to human ATOH7 (atonal bHLH transcription factor 7).

NR:

description
PREDICTED: protein atonal homolog 7

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0045165 cell fate commitment biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0036269 swimming behavior biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
TU136465 False 438 lncRNA 0.37 5 9430178 9434596
TU136467 False 667 lncRNA 0.35 4 9430178 9434596
XM_043254742.1 True 1313 mRNA 0.45 3 9430203 9434605
XM_043254743.1 False 1069 mRNA 0.45 4 9430203 9434605
XM_043254744.1 False 408 mRNA 0.38 4 9430178 9431602
XM_043254745.1 False 383 mRNA 0.39 4 9430200 9431602

Neighbor

gene id symbol gene type direction distance location
si:dkey-51a16.9 si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796 coding upstream 2041 9422476 ~ 9428137 (+)
LOC122356913 LOC107559323,LOC107743586,LOC107666393,LOC107601813,LOC107726938 coding upstream 9703 9418159 ~ 9420475 (+)
LOC122357057 LOC107726934,LOC107666357,LOC107559322,LOC107601796,LOC107743586,LOC107601813 coding upstream 13321 9414341 ~ 9416857 (+)
calhm1 calhm1,LOC107726957,LOC107601812 coding upstream 15982 9412350 ~ 9414196 (+)
calhm3 calhm3,LOC107726959,LOC107666391,LOC107743606,LOC107559321,LOC107578949 coding upstream 18058 9409751 ~ 9412120 (+)
pkd2l1 pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815 coding downstream 2076 9436681 ~ 9443708 (+)
bag3 LOC107726946,LOC107666417,LOC107655437,LOC107743505,LOC107601798 coding downstream 16575 9451180 ~ 9456908 (+)
inpp5f inpp5f,LOC107726944,LOC107666413,LOC107743504 coding downstream 22952 9457557 ~ 9473534 (+)
LOC122356643 sec23ip,LOC107666414,LOC107655440,LOC107743502 coding downstream 47606 9482211 ~ 9491406 (+)
pcbd1 pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445 coding downstream 115128 9549733 ~ 9552495 (+)
G92147 NA non-coding upstream 154479 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 285667 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 332273 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 464589 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 533269 8836716 ~ 8896909 (+)
G92313 NA non-coding downstream 15841 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 44816 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 136384 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 157814 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 289791 9724396 ~ 9727967 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 266064 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 341057 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 402269 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 690083 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 747126 8666267 ~ 8683052 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 770508 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 981635 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1530250 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1778921 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 1820989 11255594 ~ 11262620 (+)

Expression


Co-expression Network