G92195 (sf3b5,LOC107601807)


Basic Information

Item Value
gene id G92195
gene name sf3b5,LOC107601807
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8738975 ~ 8740089 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136475
ATTGGATATCAACTTTATTTTCTTCAAACACACTTGTAGTTCAACAACCTatacaaaatatcataaaaaaagaacaaaacattgtttgtgAACCAGTCATGAGGATTCAAAGATCGCCCACAACCCCCCATGAGTCCGGGGTCTCTACATTTGATCTCCCAGCACTGAATGAACATAAAACATCCAGTCAAAAAGACCCTAAGCATCTTCAGGTTTGTCAGCTGGCGGACCACACGGCTGCAGCATCTTCTCCATCAGGTTAAAGCGGACCCGAGCCTTGCTCTCGTTCTCAGCGACGGCAAAGTAATTGAGAAGGTCAAAATGGCCCATGTAGGAGCAGTATGAGTCTCTGTGTTGGTTAACCAGCCATTCCCATTTGCTGGTGTCTGCGTGACCCGTGCCGATGTACTTCGACTGCAGATGCTCCAGCTGACTGTGGATGTTATAACGGTCCGTCATCTTCAACTGTGTttAAAGTAAAAACTGAGTAAACTATGAAGGAAGTAAGTGATGTGGTCTTTTATAAGTGTTGTTAGCTTCGCGGCTGGGCGGAGAATCCGGCTGAGACGCGGAGCGGAAGGAGTTACTCAGAAACCCGTCGCTGTGGAAAACATTGGAGCAGACAAGAGTTCCGCTCGGATGAACCGCGGGCGTGTCAGGTTCTTATCACTCCGAAGGGGTTTGTTA

Function

symbol description
sf3b5 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and precatalytic spliceosome. Orthologous to human SF3B5 (splicing factor 3b subunit 5).

NR:

description
splicing factor 3B subunit 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136475 True 687 lncRNA 0.47 2 8738975 8740089

Neighbor

gene id symbol gene type direction distance location
rgs17 rgs17,LOC107552952,LOC107743539,LOC107666476,LOC107676609,LOC107601843,LOC107725462 coding downstream 37850 8683957 ~ 8701125 (-)
map3k21 si:ch211-120p12.3,LOC107743542,LOC107666507,LOC107552954,LOC108434955 coding downstream 75386 8647454 ~ 8663589 (-)
prim2 prim2,LOC107666539,LOC107725490,LOC107676604,LOC107743543,LOC108443732 coding downstream 98968 8585581 ~ 8640007 (-)
si:dkey-103j14.5 si:dkey-103j14.5,LOC107725445,LOC107666467,LOC107601805 coding downstream 237373 8480892 ~ 8501602 (-)
LOC122356335 kif1bp,LOC107666503,LOC107676599,LOC107743600,LOC107601781 coding downstream 316937 8416732 ~ 8422038 (-)
phactr2 phactr2,LOC107666519,LOC107601847,LOC107552951,LOC107743595,LOC107676579 coding upstream 4755 8744844 ~ 8778565 (-)
cog2 cog2,LOC107601846,LOC107725477,LOC107666500,LOC107743537,LOC107676580,LOC107552949 coding upstream 42909 8782998 ~ 8790869 (-)
galnt2 galnt2,LOC107743534,LOC107725470,LOC107666462,LOC107676591 coding upstream 69362 8809451 ~ 8874001 (-)
urb2 urb2,LOC107725468,LOC107666477,LOC107552917 coding upstream 138432 8878521 ~ 8892805 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC107676603 coding upstream 168726 8908815 ~ 8917062 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding downstream 60589 8667496 ~ 8678386 (-)
LOC122356657 NA non-coding downstream 61718 8675587 ~ 8677257 (-)
LOC122356656 NA non-coding downstream 63439 8669235 ~ 8675536 (-)
G92004 NA non-coding downstream 146401 8591358 ~ 8592574 (-)
G91968 NA non-coding downstream 267673 8469272 ~ 8471302 (-)
G92205 pgbd5,LOC107601786,LOC107725485,LOC107552948,LOC107743535 non-coding upstream 56782 8796871 ~ 8803406 (-)
G92235 NA non-coding upstream 234996 8975085 ~ 8975334 (-)
G92251 echs1,LOC107743519,LOC107725439,LOC107601864,LOC107676592,LOC107666378 non-coding upstream 281721 9021810 ~ 9022207 (-)
G92263 NA non-coding upstream 367981 9108070 ~ 9108361 (-)
G92264 NA non-coding upstream 372206 9112295 ~ 9112589 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 691074 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 922596 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2239402 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 2342549 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2511703 6220175 ~ 6227272 (-)
G92267 NA other upstream 375004 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1434324 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1892161 10632250 ~ 10634566 (-)
G92819 NA other upstream 2184855 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2460463 11200552 ~ 11218985 (-)

Expression


Co-expression Network