G92205 (pgbd5,LOC107601786,LOC107725485,LOC107552948,LOC107743535)


Basic Information

Item Value
gene id G92205
gene name pgbd5,LOC107601786,LOC107725485,LOC107552948,LOC107743535
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8796871 ~ 8803406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136496
CTTTAGTGGGAGAGTAGGCGTTAGTGAGGAACCTGAAGTTGCCTTTGTTGTACCAGTTGATTATGGACATATTGCCTCTCATCTTAATGTGAGACTGGCCACGTTGCTGTGGAGCCTCCGTATTGATCAGCATAGACTGAGGAAGACCTGTACAATCACTCTTCCTAGTGCTCAGCAACCCGCAGCAGTAGATGCCTGCAGGAGAAGGaacatattacagaaaaaacaaatccGGAGCTGGCTGAGAATGAATATATTTAGCCTGAACGTTCAGTGTATGGCAAGGGTCACATATAGAGGTCACAACGCCTGCGTAATCTAAAAAAATGTGAGCAGATGTCTTGTCCACAGCACTGCCAGATGCTGCAGCCTATCTGAACGTGGCCTAGAAATCAGAAATCAGATATGACATCTGAGATATGACGATAAATCCTCCTCCTCACATGGGAAAGGGGTGTGACTAATCTTTACTTTAAGATTTTCATCTCCATTCTCTATATTTGTGCAATTAAcaaagtgctgtcaaatgtcCTTAAAactggaagtaaaaaaaaatttatacaaACTATTTAGACGcgtaaatgacaaatattttaaaatagtttttgtgttttaaagttaattaaaagcGACATTAGTATTTCAGCGATACTAAAATGACGCTGCAGGAGACTCCTCATCAGTAAAGTTGCATTACACGACACCTTCAACTAAACGTGTGGAGATGGATGAAAGCTGTGGAGCCTGATACTGTGTGAATTGAAAGGAACAGCTGGGCCAAAAAATGCCAGAACAGCAGTTTTGGGGAAGCTGCTCTAAAACTGTCACGATACAAGATCCTCTTAATTCAGAGCAAAGTAGGCCTAGTTAAAtactctttttttgtaaagagtTTTTTCACCATAGCTACTAGTAAAAAAGGAGCTAACTACActgaagccatttttaaatactgtattttaggGATGCCCGATCGATTGCtctgcaaagttcagctccaactttaatcaaacacacctaaagCAACTAATTAAGGTCTTCAGGATCGCTTGAAAATGTAtagcaggtgtgtttgattagagttggagctgaactttgcaggacGATCACCAGGAGAAGGACTGGGCCACCctgctgtatatatttgtatgaaaaatgtatttgtacagTGAACAGTTAGTTATGAGGATAGCATTAAAGCAGGTAAGAAAattatgctgtttgtttttccgCTTTGTGTTTGTAATGTTTGAACTTCTCTGCTGGATTAAGCTCTTTGAAGGATTCATTGGATTTTTCAAATTAGTTAACTTGTTATTAtagcattcatcaaaataatGGCCTGATAATACAATTTCTTTAATACAACAGACATGTTGTGTGATGTTTTGGCTTACAGCCCACTTTGACaattgtacagaaaaaaaaaaatcacttactgTAATCTGGAAGCTATTGTAAttgtgaaacatgaaaaaaaaaaaacatgatgtaGCTTTTTACAACGTTACTTTTTGAAAAAGGTTTGAAAACAGCTCAGCTAATGTCACACTACTGAATAGTCACTACGTTTAGTTAATAACTCTCTAAATACTACAGGACAGCACTGCATGAAGCTGATGTATAAATTCCTCATGACATACAATTATGACCTACTTCTCTAATAACAAAAAGGGTTTTGATTCAAAtgtagagagaaaaaagaagctGGCCATCAGCCTAATCCACTCTAGCTGTGTTAACATTCACTTCTTGCTGCCCAGCTGGAGGCTTTCAAATAATCTTTGAGTATGAAACGCGCGTTTGCTGTGAGAACTCAAGGTCAACTTCCTCTCACTCTCTCCATTTATTCCTTGCCACAGGATGCTGTCACCGTGTAATTAAAAACTGCAGGGGATGAGGAACATCAGATGGAGAGAAGATTaaagagaaagggaaaaaagaagcaaagcaaAGCCAAGGCAGAATTCACTGAGAGAAGTAGAGCAGATAAGGATGCAAGGAAGTGACAGATGCAGTTACAGCACCTACCCTGTTTCTCAAATTCCTGAAACAAGTTTAGACTTGTGATGCTTGGGCCAGTGAAGATGATTGCATTACGGCCAGCCAGATTCTGACAGAGCTGCTTGGCCACCAGACTGTGAAGCTGGGGTTTATTTTTCAGCGTGTCCAAACCATCTGGACCCGGACCCTCCTTTAGATGGACATAGATCTGAAACCATGTGATGTAACATCTTGGGGCAGTTGGCGATGTCCTTCTGCGCTGTGCGCTCACCTGACAGATgaaaccagtggagctgcactGTCGAACCCACAGGCTGAactttctcttcttcctcttgcGCAGCTCCCTCTCTGTACATGTGGTAATGAACACGGGGTCCTCATCAATCAAGGGCTCGTGGAGGACCTGAGGGGAAGCAGCATGTCTCATTTGAAAACTCCACCATGATAACACTTTATACGCATCACTTGTCAATGCAAAGTTgcttttttaagctttttatgTTCCCTGCAGGAGATGCACTCTGATTGAAGATCCTGTGAAGAGATGTTGGCTCTTCAAGTCAGTGAATCTTTACCTGTGTCTGTGAGGGTCTAAAGGACGAAGCGAAGCTCTGCTGGAGAGAGTCCAGGAACGGTTGGATCTTATAGAGACCCTGACTGCCACCTTGGCTGGAGCGGAAGGCTACGACGTGGAAGTACTTGAGGATCTTCTCGAACCGTGCCTGGCTCATCTTGAGCGCGATGCTTCGATTACTGAAGAATCCGCTGCTCCAGATGCTCAGCACTGACTCGCAACGGTTCACGCCTGTAGAAGTAACGTAGCCCAGAAAGGCCTTCATCTCAACCAGCGTCACATTGGTCCAGCCTTCATCGCTGCCAAAGCGCTCCTGGTACTTCTTGGCATACATGTTGGTCTGGGTCACCATGTTCTGAATGACGTTGTCAGGGACAAACAGCTGGAAGAAGTCCATGGCCGTGGTAGTGGCTGGCATTTTCTGTGTCG

Function

symbol description
pgbd5 Predicted to enable transposase activity. Predicted to be involved in non-replicative transposition, DNA-mediated. Predicted to be active in nucleus. Orthologous to human PGBD5 (piggyBac transposable element derived 5).

NR:

description
PREDICTED: piggyBac transposable element-derived protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136496 True 3010 lncRNA 0.42 3 8796871 8803406

Neighbor

gene id symbol gene type direction distance location
cog2 cog2,LOC107601846,LOC107725477,LOC107666500,LOC107743537,LOC107676580,LOC107552949 coding downstream 6002 8782998 ~ 8790869 (-)
phactr2 phactr2,LOC107666519,LOC107601847,LOC107552951,LOC107743595,LOC107676579 coding downstream 18306 8744844 ~ 8778565 (-)
rgs17 rgs17,LOC107552952,LOC107743539,LOC107666476,LOC107676609,LOC107601843,LOC107725462 coding downstream 95746 8683957 ~ 8701125 (-)
map3k21 si:ch211-120p12.3,LOC107743542,LOC107666507,LOC107552954,LOC108434955 coding downstream 133282 8647454 ~ 8663589 (-)
prim2 prim2,LOC107666539,LOC107725490,LOC107676604,LOC107743543,LOC108443732 coding downstream 156864 8585581 ~ 8640007 (-)
galnt2 galnt2,LOC107743534,LOC107725470,LOC107666462,LOC107676591 coding upstream 6045 8809451 ~ 8874001 (-)
urb2 urb2,LOC107725468,LOC107666477,LOC107552917 coding upstream 75115 8878521 ~ 8892805 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC107676603 coding upstream 105409 8908815 ~ 8917062 (-)
rhoua rhoua,LOC107601857,LOC107676561,LOC107666438,LOC107725498,LOC107743528,LOC107552943 coding upstream 129558 8932964 ~ 8939928 (-)
LOC122356963 tbp,LOC107725488,LOC107666436,LOC107601858,LOC107676577,LOC107552942 coding upstream 140029 8943435 ~ 8947042 (-)
G92195 sf3b5,LOC107601807 non-coding downstream 56782 8738975 ~ 8740089 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding downstream 118485 8667496 ~ 8678386 (-)
LOC122356657 NA non-coding downstream 119614 8675587 ~ 8677257 (-)
LOC122356656 NA non-coding downstream 121335 8669235 ~ 8675536 (-)
G92004 NA non-coding downstream 204297 8591358 ~ 8592574 (-)
G92235 NA non-coding upstream 171679 8975085 ~ 8975334 (-)
G92251 echs1,LOC107743519,LOC107725439,LOC107601864,LOC107676592,LOC107666378 non-coding upstream 218404 9021810 ~ 9022207 (-)
G92263 NA non-coding upstream 304664 9108070 ~ 9108361 (-)
G92264 NA non-coding upstream 308889 9112295 ~ 9112589 (-)
G92265 NA non-coding upstream 309501 9112907 ~ 9113298 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 748970 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 980492 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2297298 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 2400445 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2569599 6220175 ~ 6227272 (-)
G92267 NA other upstream 311687 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1371007 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1828844 10632250 ~ 10634566 (-)
G92819 NA other upstream 2121538 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2397146 11200552 ~ 11218985 (-)

Expression


Co-expression Network