LOC122356835


Basic Information

Item Value
gene id LOC122356835
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9570989 ~ 9583671 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136663
TTGTTGTGCCACATCATCATTATCAGTCATGAAGGTTGCACTCTCTGCAATATCATTTcctgtatttatttctgtgagaTAGTTGTAGCACATATCTGTGTGTCAAGTACATTAGGGAGGGGTGCATCATACTTCCTGCTGGCTTCACTGGAGGCAGAAGTCGTCTGGACATCATCCACTGCAGTGTTAAAACTCTTAATGTTCTCAGATGAATACAGGCCAGAGGGGTTATTGTACATGTTGGTGACCACCCTTGGACTGCCAGAATTGAAAGGCATGGCGCTCCTGTTATGAGCAGAGCCTATATGTTTCACCtcctacagaaaaaaagagcaggTCCTTTAAGTGTATCTGTCTCATAAAACAGAAGAGAGTACTAGAAGCTTAAAAGgttatttcactcaaaaattatttcactctcatgtcattccgaacctgtatgactttctcctttttttctatgtataatgaaaacaaaacagcgGGCTCTAATATTGATGTGGACTCtactgactttcactgtattAAGACAATTTCTTCAGttcttcaaaaatgtcttcttttgtgaaATACAGTCAAAaagatttggaatgacacaaaAGCAATAGATAATTTCATAAGAATTTCAGTAATACATAACTATTCAGGCCGGAACAGTTATTTGAgaatcaatattttttctataaCTGTAGATATTACAACCAAGTTAATGTGAAAAAGGACTATTTaacaacaggaaaaaaactgaTGTGGAAAGGTTTTTTTCGACACTAATGACTAAGGTATTTATGACATTGTGAAACTTTCCTCTGTTAACAACATATACAGTTGTTTCTTATTATGTTTCTCTCCCTGCTTAAATTGGGAAACATTTCGAACACCCAAACTATGTAGTCAAGCTCCACACACTTCCTATGATCGTCCACATTCTGACCCTTACTTTCCAACATAGCCTGCAGGATGTGGGTCTTGCGTCATGGTTTTGGATGATAAACCTACTGGTCTCCATGGATAAGGCTTGTTAGGACATAAACAATGACTTCACTTTGGCAGCCTGTGGTGCCGTGCCTTTATTTGTTTAGCGGCTACGGTTCTGTTATGTATGGCAATCTCATGCACTACGAAGGCCTTTAAAGCTCACTGAAAGTGATCACGGGTCCATTTAAAAGTCCCTCAGCTTTCAAAAAAGCTGAGCTAAAACGCACCTGTGTTTCTTTATTGGCCAGATTCATCTTGTATGGATTGGTCTTTCCTTCTTCAGTGACCAGTGGGGACCACATTTTCGATTCTGatctacaaaaagaaaaaaacaaaaacaaaaaaaccccactttcAACAGTGTatcagtaaatgatgaaaaaaaaaaaataataataaaaaaatcattgtggCTTTACAATAACAAGCCTGGGCCCAGTGTGAAAGTTTCAGGCATGTTGATGCAATCGTGCAAATCGTGTATTGCATAAGTTTGCACggcataaaaacaacaaattctGCTGATTTAGACTTGTCACCAAGGTGACGTTATCTAGCCGACTGACACAGACAAGAATATGTTGAAATTGTGAGAATGGCTTGTGACAGACTTTAGTTGACAATTAAACCCAGCAACAATTTACATTGCATGTCGCAATAAATGAGTTATAGCTAATAACTAAAAACGTAGTGATGTTTTTTCCtttgaaatatcttttttttcctgacagtACTGACAGTAAAAACTGCAACTTGGggaaaaaatacactaaaatgtaaCATGATCTCAGTAAAAGTAATGCCACACTAATggttaataatattacatttacaatgcGTGGAAGAATTTAATGAAAGCctacatttgtgtttgtttttagaagATGTTTGATTACATTATGCATTTCTGGACACTCATACATACTCTCagctaaaaacacattcagaccAACCACTGCATGTAGTAAAGTAATTCCCCACCTGTCAATGGAAAGCACCATTTCCTCCACGCAAGCTTTGATTTTATTCTGTGCTTCCAGGTGAGTCATGCCGTCTGTTGACTCTCCGTCTATGGCCAGGATCATGTCCCCCATACAAAGGTCAGCTTGTGCCGCTTTGCTTCCTGGGGTCACCTGAAAAAGTCATATCTGGTCATTATCGTAACCTAAAAGGTTTTAGAAGAAAATTGTGTAGTTTTTCCATGCCTAATTATACACTTGGCAAAACTGTGAGAATAACTTCTCTTTGTTGTAGCTTTTACTTGTTAAATGATGACTTCCTCTATGAAGTGTTTCTGAGAAAAGCGTTTTGGTTAATGGTCTACTCAGcaggtttttatttacttttagctCGATCTTATTCATCCCAGTAGTAACATGGGTTTACGTCAACTAGAATGTGAAGTGTTTGTTTATGAACTGCATCCACTTCACGcaagctgtttattttttctggCCACTCTTGGATCCAATCCCAACTACAAGGTCGTTCGCATCAAAGATGGATATCTGGAGAGCGTGATGCCAGGAAGTAGGAGCGTCCATGAAGAGCCAGCAAGGAAAGATGGCTGGAGAGAGAGACGTCGGAGAATGTGAAGACAGTGAAGGACTGAATGAGAGACATGCAGCCTTTTTCtttacaagatgttaactgatggagtTATGTCGACTACTTGTGgatagtgatgtttttatccatCCACTGCAGAGGAGCC
>XR_006252390.1
GGAAGTCAACCGGTGGGTCTCAGGTGCTGTGATAGGGTTCTGGTTGTCGGTCCTGAGGGTAACAAAGTCTTTTGGCAGGATATCTGGAGAGCGTGATGCCAGGAAGTAGGAGCGTCCATGAAGAGCCAGCAAGGAAAGATGGCTGGAGAGAGAGACGTCGGAGAATGTGAAGACAGTGAAGGACTGAATGAGAGACATGCAGCCTTTTTCtttacaagatgttaactgatggagtTATGTCGACTACTTGTGgatagtgatgtttttatccatCCACTGCAGAGGAGCCATTGGCGGGCAAGTGAAGCAACGTTACATTTCTCCACATCTGTTTTGATGAGGAAACAATCGCATCTACGTTTTTGGCCAAACCATTCCTATATACCGCATGTTAATCGAACTACTGCATTGACATTTCAATTCAGTGGTTTGACTTTTATAAATGCTGAAGGCTGCCAAATGAAGCTAACATTTGTGAGAAGTCTATAATGATCtctgtgtattgtgtgtgaaACATGCCGATAGTGTACTTGACAGATGGGAAGCCACAGACGTTGCATCATCCATTTTGGGCTGTTTCTGCTAGATTCTTTAAAACTGATTGTATCTCTAAACTGTGTAATCTGTGTGAAAGTTGACATTATTACCCAAATTTTACTTGTTCTGAAGTGTCAGATCAGGaagactgttttattttatttgattccattattatctttattcatttatttttaattagtacttttagttttaagtgatcaagtgacagtaaagacatgtatttgtaatttgttaTTTGGAACATTCTGTCATAGAATCTGGGAAAAAAGAGGGTTACAAAGTGTTCGAGACTGAtaatacactaaataaaaatgttaattgagtAGCAA
>XR_006252391.1
CACAAATCGGGGGAAACGGGCAGATGATTAGCTAGCAAACAGGTTTACTGATTCACTGGGAGCGGGAGAGGATATCTGGAGAGCGTGATGCCAGGAAGTAGGAGCGTCCATGAAGAGCCAGCAAGGAAAGATGGCTGGAGAGAGAGACGTCGGAGAATGTGAAGACAGTGAAGGACTGAATGAGAGACATGCAGCCTTTTTCtttacaagatgttaactgatggagtTATGTCGACTACTTGTGgatagtgatgtttttatccatCCACTGCAGAGGAGCCATTGGCGGGCAAGTGAAGCAACGTTACATTTCTCCACATCTGTTTTGATGAGGAAACAATCGCATCTACGTTTTTGGCCAAACCATTCCTATATACCGCATGTTAATCGAACTACTGCATTGACATTTCAATTCAGTGGTTTGACTTTTATAAATGCTGAAGGCTGCCAAATGAAGCTAACATTTGTGAGAAGTCTATAATGATCtctgtgtattgtgtgtgaaACATGCCGATAGTGTACTTGACAGATGGGAAGCCACAGACGTTGCATCATCCATTTTGGGCTGTTTCTGCTAGATTCTTTAAAACTGATTGTATCTCTAAACTGTGTAATCTGTGTGAAAGTTGACATTATTACCCAAATTTTACTTGTTCTGAAGTGTCAGATCAGGaagactgttttattttatttgattccattattatctttattcatttatttttaattagtacttttagttttaagtgatcaagtgacagtaaagacatgtatttgtaatttgttaTTTGGAACATTCTGTCATAGAATCTGGGAAAAAAGAGGGTTACAAAGTGTTCGAGACTGAtaatacactaaataaaaatgttaattgagtAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136663 True 2692 lncRNA 0.38 3 9570989 9583070
XR_006252390.1 False 890 lncRNA 0.39 2 9582631 9583671
XR_006252391.1 False 882 lncRNA 0.38 3 9582555 9583671

Neighbor

gene id symbol gene type direction distance location
neurog3 LOC107666354,LOC107726936,LOC107601803,LOC107655417 coding upstream 2462 9567617 ~ 9568527 (+)
pcbd1 pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445 coding upstream 18494 9549733 ~ 9552495 (+)
LOC122356643 sec23ip,LOC107666414,LOC107655440,LOC107743502 coding upstream 79583 9482211 ~ 9491406 (+)
inpp5f inpp5f,LOC107726944,LOC107666413,LOC107743504 coding upstream 97455 9457557 ~ 9473534 (+)
bag3 LOC107726946,LOC107666417,LOC107655437,LOC107743505,LOC107601798 coding upstream 114081 9451180 ~ 9456908 (+)
bcl11aa bcl11aa,bcl11a,LOC107666449,LOC107601892,LOC107655449,LOC107559339,LOC107743494 coding downstream 31356 9615027 ~ 9667838 (+)
fancl fancl,LOC107585345,LOC107718841 coding downstream 467416 10051087 ~ 10067172 (+)
LOC122356189 inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding downstream 710535 10294206 ~ 10297714 (+)
ldb1a ldb1a,ldb1,LOC107707596,LOC107585322,LOC107673939,LOC108442788 coding downstream 729743 10313414 ~ 10333604 (+)
LOC122357143 NA coding downstream 745473 10329144 ~ 10329279 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding upstream 91237 9479421 ~ 9479752 (+)
G92313 NA non-coding upstream 120300 9450446 ~ 9450689 (+)
G92147 NA non-coding upstream 295290 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 426478 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 473084 9050367 ~ 9097905 (+)
G92361 NA non-coding downstream 8748 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 140725 9724396 ~ 9727967 (+)
G92434 NA non-coding downstream 147054 9730725 ~ 9731002 (+)
LOC122356803 NA non-coding downstream 461110 10044781 ~ 10049442 (+)
G92513 NA non-coding downstream 484817 10068488 ~ 10070783 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 136384 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 406875 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 481868 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 543080 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 830894 8739036 ~ 8740095 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 621442 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 832569 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1381184 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1629855 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 1671923 11255594 ~ 11262620 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006639 pdlim1 coding NC_007124.7 CM002897.2 25762908 ~ 25774183 (-)
grasscarp (Ctenopharyngodon idella) G76914 NA non-coding CI01000012 null 11897330 ~ 11900381 (-)