LOC122357134


Basic Information

Item Value
gene id LOC122357134
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10275545 ~ 10293934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU136978
GCAGTCACaaagtgcaatttaaaataaataaaaaatagtctGTTGGTATGAAGACCTGAAATGTCATTTCTAAGCATACAAGACTTATAAGACACAAGAATTATTTATGTAGTGCCGTTAGCCAGTGTGTACTGATATAATATATAGTCCATGTATTCCTTTATTACAAAGCTTACCACAGGAACTGGCCCACTGTCATCCTTCTATGAGGTATGccaaagttatttttgttgacCTGCAGTGCTGACTGATTATCTGTTTTgtaattgatgtttttttttctcccatgtACTCATCACAGCAcagcactaaaaatacaaaatgaacaaaaccatCAATGCTTTTGCACTGTGCTGTGATTGTATGTAGGTGTCCATAGGAAGACCTGTGATGGGATTTGAATCTGTGAGATCATTCCTTCATTTTGCCTTCCCCTAGCCATATGTCCTTCATTCTTCCTCTTAACACATCACTTAACCGCTAATTTATTcctagaaatattttaaatgtcttactGCAAATGCGGAGCTGAATTAAGATGGTCTAGCATCAggtgaattcaaataaaaatatatcttttaaaatcaagtaaaaataactGACCATAGCGCAATTTCAAACCCTTTCAACACAATAACAGATATttgatttaaacttaaaatcacT
>XR_006252427.1
ATATACATGTCACTgtcaacataaaaataaataaatgaaatacataataaatcacTGCAGTTGGTCTGTGTGGCTTTTAGATTCATGGTTCGTTTTAGATTAGATCGTGTAATATATTACACTACTTCCGCACATACTATAAGCCATTATGGATTCATATTAATTGTGTTTACAATaggttttaatattgttttgaatctCGCCATGTAGTCGCTGGATGGACATCTAGTGGCTGGATGGTTTGCGCATGCGCAGTATGCAGATAGCGCAGAACTGCAGTTGTTGGTCGTTGAAGGAGGTGAGacTTATAACGGTTAAAGATGACAACCTCTTGGAGTGATCGACTCCAGAATTATGCAGAACTTCCTGCCAACATGGATGGTTTATCCATGAAGAAATACAGAAGAGAGGTGCATCACAGCTTACCACAGGAACTGGCCCACTGTCATCCTTCTATGAGGTATGccaaagttatttttgttgacCTGCAGTGCTGACTGATTATCTGTTTTgtaattgatgtttttttttctcccatgtACTCATCACAGCAcagcactaaaaatacaaaatgaacaaaaccatCAATGCTTTTGCACTGTGCTGTGATTGTATGTAGGTGTCCATAGGAAGACCTGTGATGGGATTTGAATCTGTGAGATCATTCCTTCATTTTGCCTTCCCCTAGCCATATGTCCTTCATTCTTCCTCTTAACACATCACTTAACCGCTAATTTATTcctagaaatattttaaatgtcttactGCAAATGCGGAGCTGAATTAAGATGGTCTAGCATCAggtgaattcaaataaaaatatatcttttaaaatcaagtaaaaataactGACCATAGCGCAATTTCAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136978 False 666 lncRNA 0.34 1 10275545 10276210
XR_006252427.1 True 871 lncRNA 0.37 3 10275590 10293934

Neighbor

gene id symbol gene type direction distance location
LOC122356762 vrk2,LOC107718826,LOC107693217,LOC107560458,LOC107585344 coding downstream 196377 10066925 ~ 10079168 (-)
papolg papolg,LOC107601893,LOC107726947,LOC107666450,LOC107559338,LOC107743495 coding downstream 669042 9596826 ~ 9606503 (-)
rel LOC107726948,LOC107666554,LOC107601890,LOC107655447,LOC107559337,LOC107743496 coding downstream 681305 9584404 ~ 9594240 (-)
pdlim1 pdlim1,LOC107666525,LOC107726967,LOC107601889,LOC107655446,LOC107743498,LOC107559336 coding downstream 700970 9569098 ~ 9574575 (-)
sgpl1 sgpl1,LOC107726953,LOC107601887,LOC107655444,LOC107559334,LOC107666355 coding downstream 711472 9553287 ~ 9564073 (-)
LOC122356208 pcgf6,LOC107588739,LOC107707701,LOC107656932,LOC107585366,LOC107673880 coding upstream 5223 10299157 ~ 10305442 (-)
LOC122356628 LOC107707586,LOC107588654,LOC107688299,LOC107716331,LOC107673895,LOC107585321 coding upstream 51523 10345457 ~ 10349224 (-)
chata chata,LOC107588646,LOC107683741,LOC107707518,LOC107716339,LOC107673961,LOC107585314 coding upstream 341031 10634965 ~ 10641860 (-)
slc18a3a slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 coding upstream 348625 10642559 ~ 10645119 (-)
rgra rgr,rgra,LOC107588645,LOC107585363,LOC105909826,LOC100696641 coding upstream 357896 10651830 ~ 10658909 (-)
G92551 nt5c2a,nt5c2,LOC107716328,LOC107673949 non-coding downstream 2042 10271415 ~ 10273503 (-)
G92550 NA non-coding downstream 25820 10248920 ~ 10249725 (-)
G92548 NA non-coding downstream 32484 10240266 ~ 10243061 (-)
LOC122356802 NA non-coding downstream 225162 9699013 ~ 10050383 (-)
G92427 NA non-coding downstream 574681 9700633 ~ 9700864 (-)
G92575 NA non-coding upstream 21762 10315696 ~ 10415232 (-)
G92582 NA non-coding upstream 34688 10328622 ~ 10329585 (-)
G92584 LOC107588657,LOC107688297,LOC107707596,LOC107585322 non-coding upstream 37293 10331227 ~ 10333599 (-)
G92610 NA non-coding upstream 123591 10417525 ~ 10417809 (-)
G92639 NA non-coding upstream 280853 10574787 ~ 10575234 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 83779 10174413 ~ 10191766 (-)
G92267 NA other downstream 1159994 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2227644 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 2459166 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 3775972 6453531 ~ 6499573 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 338316 10632250 ~ 10634566 (-)
G92819 NA other upstream 631010 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 906618 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 1231469 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 1349996 11643930 ~ 11648035 (-)

Expression


Co-expression Network