ly6pge (si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825)


Basic Information

Item Value
gene id ly6pge
gene name si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10416240 ~ 10420426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU137060
CTAGCATGCAGCAGTGTATGGGTGGAGCACAGTAACCGATCCCTCATCTCTGATTAGTGGAGATGGTGAGGATCCATTCAGATCTTAAGACCCAAGCACAGGCCTCAGTGGACAGGCTGGTAATCTGAGTGTCCTCACTGCCGTTGGGTATTAGCTCCCTGAAAGCAGGGCTTAAGCTCAGGAGTTTTAAGAGCAAACAACCTGCTTTTCACTGTGCTAACCTGACAGCCATAGACCACCGGCAACATGAG
>XM_043256317.1
GCGGATCTATTTCTTAATTTGGAGTAAAGGTTTGGTTTTGGTTCCCCTTACTCAAATAGCCTTTGCATCAACTGTTTGATTGGTTGTGTCCACTGTTCTGCTGTGTCACAAAGAGAAATGATGTGAGTTTGGTCCTTGATAAACTAAGACGGCATATGGAGGCATTAGCTGAATGAAATCTGTACAGGGAGCATCAGACCCCTGGCTAGCATGCAGCAGTGTATGGGTGGAGCACAGTAACCGATCCCTCATCTCTGATTAGTGGAGATGGTGAGGATCCATTCAGATCTTAAGACCCAAGCACAGGCCTCAGTGGACAGGCTGGTAATCTGAGTGTCCTCACTGCCGTTGGGTATTAGCTCCCTGAAAGCAGGGCTTAAGCTCAGGAGTTTTAAGAGCAAACAACCTGCTTTTCACTGTGCTAACCTGACAGCCATAGACCACCGGCAACATGAGAGCAGAACATTTCTTCATGCTGCTGGGCCTGGGCCTCATCCTCCTCGCTGCTCACAgtgAGGCGCTGAAGTGTTACACCTGCATGGGCTCTACAGATGAAGACTGTAATCGCCAGGGCTCTAAAACATGTCCGAGCTACTCGGATGCATGTGCTGTTGTCCGTGGACATGGCAGTGGCGTAATGAAGTCGTGCTCGTACAAATCCTTCTGCAGCCAGGCTAACAGCCAGGGTTACAGAGCTCCAGGGGTCAAAGTTCACTGCTGCTACTCCGATGACTGCAATGTGGCTGGACACGCCACCAGAATCAGCACAGGCTTCAGCTTCCTCCTGGGCCTTCTGTTATTCGTCTGGCATCTGCTGTCAAACTAATGCTTCTCTAGACAAGCTGACCTGGCTATTAAAGACCATTACCATAGTGGAACTTGACGGAACTCTGTATATTCTGTGATTAGGGATGTATGGATTCGCGTTTAGTACGATTAATGGTTATTTTCCAAatcatcaaagtgatcatccttatccccttgttcGTGAGGATAGTGAACAGAGCACTCgcatgtcattatttagtcgtttgcaatgcacttgtcaaagagagatgtaatttcctcatattcagctgggatgttcccatgacaacgaaTGCAGCACATTGTGTTTCTGAAGATTCGTTAGGGAAGGGATGCAAtgcacaaaacaacattttatatacactttCTAAAGGTTTTATACATATTAGTTTtcatatattagcatattttaaaaacattttaaaaatataaaatgtatatttatttgcagcAGTTAtgctaacaacaataaaaaggctttgtgattttaaaacagcGACATCTGCTGACGCACGTCGTGCTGCgttcgttgtcatgggaacagtCCAgttgaagataatgaggaaattacatcgCTCCCTTTGAAAAGTGCATGACTAAATAATAACAAGATCATTAccatttggaaaatgaccatgaatcgTATGATACATGATATCGAATCGTTACACCCCTATCTTTGATTGTTAACATACATATTGTTAAAATACCACACTGCATATGTCAGCCAGTGTACTGCCATGGGATTGTGCATGCAATGCTATTAGGTtaata
>XR_006252423.1
ATAAACTTCTAATGCCTCAAAATGgtaagataataaaataatgtattgttattattattatattgatacTACTAATGCTTCTAAAGTtcattttattctcatttaaCTTCgttattatgctttatttattaaaaaactaaattaggaAAAGCAATAAATGGTCGGTACTTACACTTTAGGCCTTTAATGTTGAATGACTTTTGCctcttctttgtttttatttaggtgAGGCGCTGAAGTGTTACACCTGCATGGGCTCTACAGATGAAGACTGTAATCGCCAGGGCTCTAAAACATGTCCGAGCTACTCGGATGCATGTGCTGTTGTCCGTGGACATGGCAGTAAGTTTAATGGGTGGCGTAATGAAGTCGTGCTCGTACAAATCCTTCTGCAGCCAGGCTAACAGCCAGGGTTACAGAGCTCCAGGGGTCAAAGTTCACTGCTGCTACTCCGATGACTGCAATGTGGCTGGAC

Function

NR:

description
ly6/PLAUR domain-containing protein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137060 False 251 lncRNA 0.51 1 10416445 10416695
XM_043256317.1 True 1581 mRNA 0.43 3 10416240 10420426
XR_006252423.1 False 475 transcript 0.39 2 10418822 10419594

Neighbor

gene id symbol gene type direction distance location
LOC122357093 LOC107688300,LOC107673862,LOC107588652 coding upstream 1004 10389085 ~ 10415236 (+)
LOC122357091 LOC107708061,LOC107688300,LOC107716282 coding upstream 30638 10356563 ~ 10385602 (+)
nsmce4a LOC107707575,LOC107588653,LOC107688307,LOC107716332,LOC107585317 coding upstream 61926 10349788 ~ 10354314 (+)
prom2 LOC107707565,LOC107588656,LOC107688306,LOC107585354 coding upstream 72261 10334675 ~ 10343979 (+)
ldb1a ldb1a,ldb1,LOC107707596,LOC107585322,LOC107673939,LOC108442788 coding upstream 82636 10313414 ~ 10333604 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303,LOC107585316,LOC107673953 coding downstream 89088 10509514 ~ 10557882 (+)
myofl LOC107707528,LOC107588650,LOC107673938,LOC107688302,LOC107716336 coding downstream 140250 10560676 ~ 10583821 (+)
parga parg,LOC107716337,LOC107673942,LOC107585315,LOC107708050,LOC107683745 coding downstream 163955 10584381 ~ 10611491 (+)
ogdhl ogdhl,LOC107683740,LOC107707496,LOC108442924,LOC108263326 coding downstream 193513 10613939 ~ 10633243 (+)
lrit1a lrit1a,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643,LOC108442250 coding downstream 239177 10659603 ~ 10663760 (+)
G92563 NA non-coding upstream 106464 10309237 ~ 10309776 (+)
G92552 NA non-coding upstream 140062 10275584 ~ 10276178 (+)
G92524 NA non-coding upstream 250584 10164559 ~ 10165656 (+)
G92513 NA non-coding upstream 345457 10068488 ~ 10070783 (+)
LOC122356803 NA non-coding upstream 366798 10044781 ~ 10049442 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding downstream 222130 10642556 ~ 10645237 (+)
G92675 NA non-coding downstream 237082 10657508 ~ 10702103 (+)
LOC122357062 NA non-coding downstream 332807 10753233 ~ 10763691 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding downstream 400516 10820942 ~ 10947919 (+)
G92731 NA non-coding downstream 538994 10959420 ~ 10961696 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 166515 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 981635 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1252126 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 1327119 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 1388331 9025943 ~ 9027909 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 544429 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 793100 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 835168 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 968959 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 1151234 11571660 ~ 11592600 (+)

Expression


Co-expression Network