G3644


Basic Information

Item Value
gene id G3644
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 5480685 ~ 5481627 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU4052
CCTCTCGACCATTCACCATCATGTTGTGCTCCACCATGTTCCACGCTCGAGGACGGAGCATCAGCACTGGAGCCTGAGAAATGGGTGGTACATCTTGAAACTGGTTGTGCACAGCCAGGTAAACGTTATAAATGCCCTTTATTTGATTGCGATATGTTGGGCAGTTGCCATCATCAAAATCAATCTGTAACCCTTGGGCAGTAGATTTGAGTCCCATAATAAGGCGTTGTGTATTACACGGTGAAAGGTCACCAATGTCCACATGTCTGCAGTGTAATCTGTCTGGAACTGGGTTAACTCTCCAGCTTGGATCATTTCGGATGTGAGCTGTGTCCTGCAGAAAGCCTGGTAACTCTCCAGTAAGATCCAATTGAACTTTCCTTAGGACTCTCAAGTTCAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU4052 True 403 lncRNA 0.35 4 5480685 5481627

Neighbor

gene id symbol gene type direction distance location
CI01000000_05477927_05479435 RAB33BA, RAB33B coding downstream 1250 5477262 ~ 5479435 (-)
CI01000000_05465020_05466303 NA coding downstream 14376 5464058 ~ 5466516 (-)
CI01000000_05431517_05435978 CABP2B, CABP2 coding downstream 44707 5431517 ~ 5435978 (-)
CI01000000_05422567_05424822 CRYBA1L1 coding downstream 55255 5422246 ~ 5425430 (-)
CI01000000_05409025_05413963 TMEM33.L, TMEM33 coding downstream 66274 5408239 ~ 5414411 (-)
CI01000000_05488574_05498163 NAA15, NAA15A coding upstream 6709 5488336 ~ 5498163 (-)
CI01000000_05527503_05531978 NOCTA, NOCT coding upstream 45191 5526818 ~ 5532298 (-)
CI01000000_05537990_05549497 SLU7 coding upstream 55751 5537378 ~ 5549606 (-)
CI01000000_05550969_05558473 FERMT3B coding upstream 69210 5550837 ~ 5558473 (-)
CI01000000_05576790_05578937 FLRT1, FLRT1B coding upstream 93530 5575157 ~ 5579419 (-)
G3528 NA non-coding downstream 73912 5402922 ~ 5406773 (-)
G3628 NA non-coding downstream 78717 5401679 ~ 5401968 (-)
G3629 NA non-coding downstream 80435 5394847 ~ 5400250 (-)
G3627 NA non-coding downstream 86182 5393683 ~ 5394503 (-)
G3616 NA non-coding downstream 104171 5376213 ~ 5376514 (-)
G3546 NA non-coding upstream 33778 5515405 ~ 5516902 (-)
CI01000000_05685300_05686328 NA non-coding upstream 107542 5683707 ~ 5687424 (-)
G3511 NA non-coding upstream 199918 5681545 ~ 5683630 (-)
G3674 NA non-coding upstream 207274 5688901 ~ 5689134 (-)
G3563 NA non-coding upstream 240405 5722032 ~ 5722273 (-)
G2730 NA other downstream 1090533 4386383 ~ 4390152 (-)
CI01000000_04079738_04081018 MIF other downstream 1399568 4078121 ~ 4081117 (-)
G2484 NA other downstream 1907131 3570066 ~ 3573554 (-)
CI01000000_03564077_03564373 NA other downstream 1913594 3562887 ~ 3567571 (-)
G3650 NA other upstream 58836 5540463 ~ 5540881 (-)
G3716 NA other upstream 518780 6000407 ~ 6000769 (-)
G3931 NA other upstream 675386 6157013 ~ 6403525 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other upstream 4922701 10407395 ~ 10409950 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other upstream 5342784 10824324 ~ 10825464 (-)

Expression


Co-expression Network