G92772 (LOC107588620,LOC107707271,LOC107707282)


Basic Information

Item Value
gene id G92772
gene name LOC107588620,LOC107707271,LOC107707282
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11213526 ~ 11218175 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU137330
AGGAGAGTGCAGCTTTGTGCAAACAGACTCAAGAGACACTCTTGTCAATGACACAGCTTTGGAGAAATGGCTTTCAAGACCCTGCAAACAAGTTTTTGCCTGCTTCTCTTAATCTCAATTGGTTTACACTTCATCACAGGTAAAAGGACTGCTGCAATGTCCATCCGTGAAAAATGTGAGTGTGTTGAGGAAACTGGCTCAGtgcaatggaaaaaaattaaagactACAGAATCATACAGAAAGATCCTCTTTGCAACAAGGTTCAAATCATACTCCAGCTGTCAGAAAAACAGGTTTGTCTAAATGCAGACTCCAAGCAAGggaaaaaactgcaaaaatgctGGAAAAGGATTAAATTAAATCCACAGAGGAAGAAGGTCTGTCTGCAGCTCAAGAAGAATAGAccaaaaaagaccaaaaagacCAAAAAGCTGTAATTCAATTATCTTTACCTTTTCTGTATAAAAAGACAATGTGTCTTTTACAATTATTCTGACTGATCTTTAACATAGATggaatttgtatatattttgtactgCTATTTTCTAATAAAACCTTGTTTTGACATGGTCTTTGtacatttctgtctgttttatgTCGAATGTTTTATGTCGAAAGGccatttgtcatttaatttcaaaaatacaaatgacatAAACTGTAAGAAAGTGTTACAAATTACTCACCTAAATAAGATCACAAAAGCCTTGAATTCAGGGAAagaaaagaatttaaatattctaTGAACTAACCCCACCTCTGTCTATGACCattctaattaattattaaatatgccACTTTAGTCTCACCACAAAAAAACGCCTTTCaagaagggaagaaaaaacacCATCTACTGTGTCTATACCAGAAAGAATCCCACTTGTGCGATagactgatttaaaaacaaggGGTCATGCCTAGAGACGCTTTCCacctgcataaaaaaaatgacatttgtgaaGCCCCCTGCCAGCCCACTCAATTACTGCAAACCAGCTGTGACTCTCTGCTGCAGGAATATATCAGGCATCCGTAACCACTTCTGGATTTCTGTGTCACTATTTTACAGAAGTTGGACAGATTTGGAAGGCAAGGACAAAACACATAAGTTTGATTTAGGCTATTTGTGATTTGCTTTCATTGTGAAACTGAAACATACAGAAAACATCACAACTTCATCACAACTGGTGCAGATGTTGCCTGTCAGACGGTTTCGCTGAAGTACagtttgttttgacagctgtATAAAGACACCCACCTGAGAACAGTTTCAGAAGAAGCCTAGATAGCCTTCAAAAGAAGACAGCTGTACATACA
>TU137332
ACACTCACAAACACTTTCATCATGACACTGACAGCGTATGCTTCGCTGGCTTTCACCCTCAGCATCCTTCTGACAGTCCAACTGGTGGAAAGTCAATATGTTCCAAAGACCTGTCAGTGTCCGAAGATGGAGAAAAGAGTCAGGGGACCATTTTCAGATTTCAAAGTCACTCTAAAAGGTCCTAACTGTTTACAAGATGAGATCATaGTCACGCGGCAGAAGAACAGTCTCGTGTGTCTAAGTCCAAATGGGCCCCAAGGCAAACGACTGCTGACATGTTGGCAAAGGATGCAAATTAATGGCAAGGacagcaaaaaatgtttacgtcaaaaaaaacaaaagcaaaggcGAAAAAACAAGAAGCAGGTTAAACCCAGGAAGGTCAAGTCTTAACCTCAAGTGCTAAAGACACTAAGGCAAAGAATGTAAGAGATCCACAGGAGAGAATACTCTTCAAAGCTTGTGCAAAGCTTTGCACATAACAAGCATTTCATATGCACTAAACAAGCCAAGGACGTAAGAAAAGGCTCGGGAGGAGTGCACAAGTATATTGAGGCCAAAGGATGGTTTACAATGAAGACATGTTACAACAGGGACATCATTTAACCTTGACATGTTACAGAGGGATGAGTTGAGCCCTAATATGTGGGTCTAATGTACCGGCCAGtgagaagacatttttaaaaaattgtatacatttatatattcttattgttttcataaatgtatatactctTATAAGCATGTGTTCAGTGATCacaaaaatgcttgttttatagtttattctaaattaaaataaacttatttaataaacatgaa

Function

NR:

description
PREDICTED: C-X-C motif chemokine 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137330 True 1318 TUCP 0.37 4 11215492 11218175
TU137332 False 819 TUCP 0.39 4 11213526 11215087

Neighbor

gene id symbol gene type direction distance location
ppifa ppifa,LOC107668776,LOC107588732,LOC107564349,LOC107673899,LOC108442288,LOC108263515 coding upstream 61079 11149996 ~ 11152447 (+)
zmiz1a zmiz1a,LOC107588626,LOC108443181 coding upstream 66900 11033947 ~ 11146626 (+)
rps24 rps24,LOC107673958 coding upstream 220214 10990562 ~ 10993312 (+)
qrfpra LOC107668764,LOC107673889,LOC107716286,LOC107564357,LOC107564360,LOC107588699 coding upstream 223792 10986085 ~ 10989734 (+)
pald1b pald1b,LOC107588630,LOC107707320,LOC107668836,LOC107716354,LOC107673876 coding upstream 231742 10969343 ~ 10981784 (+)
ercc6 ercc6,LOC107588615,LOC107668807,LOC107757150,LOC107708008,LOC107673869 coding downstream 68875 11287050 ~ 11302394 (+)
drgx drgx,LOC107588616,LOC107708289,LOC107668808,LOC107548637,LOC107673892 coding downstream 85889 11304064 ~ 11309190 (+)
vstm4a vstm4a,LOC107588614,LOC107707245,LOC107673948,LOC107548636,LOC107668767 coding downstream 111102 11329277 ~ 11337428 (+)
lrrc18a NA coding downstream 133797 11351972 ~ 11355204 (+)
si:ch211-223a10.1 si:ch211-223a10.1,LOC107707219,LOC107757147,LOC107673964,LOC107548634,LOC107588731 coding downstream 160969 11379144 ~ 11388193 (+)
G92767 NA non-coding upstream 9842 11202654 ~ 11203684 (+)
LOC122356274 NA non-coding upstream 191470 11004910 ~ 11022056 (+)
G92748 NA non-coding upstream 228881 10984238 ~ 10984645 (+)
G92746 NA non-coding upstream 230247 10982940 ~ 10983279 (+)
G92731 NA non-coding upstream 251830 10959420 ~ 10961696 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding downstream 150091 11368266 ~ 11368907 (+)
G92923 NA non-coding downstream 196048 11414223 ~ 11462116 (+)
G92952 NA non-coding downstream 291063 11509238 ~ 11509888 (+)
G92958 NA non-coding downstream 296302 11514477 ~ 11533930 (+)
G92962 rrp12 non-coding downstream 300445 11518620 ~ 11519343 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 244612 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 793100 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 963801 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1778921 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 2049412 9161517 ~ 9164114 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 37419 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 171210 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 353485 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 385522 11603697 ~ 11604852 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 1213744 12431919 ~ 12436643 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G73716 NA non-coding CI01000012 null 9067325 ~ 9068626 (+)