cxcl12a (cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152)


Basic Information

Item Value
gene id cxcl12a
gene name cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11255594 ~ 11262620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU137340
TCACAGTTGCTCCTGGATTCTACATTGCGCGGATCTCTTCTTCACACTGCAAACATGGATCTGAAAGTGATCGTAATATTCGCTCTGATGGCGGTCGTCATTCACGCACCCGTTTCAAATGCCAAGCCCATCAGCTTGGTAGAAAGATGCTGGTGCCGTTCCACAGTCAACACAGTCCCACAGAGAAGCATTCGCGAGCTCAAGTTCCTCCACACACCGAACTGCCCCTTCCAAGTCATTGCCAAACTGAAGAACAACAAGGAGGTGTGCATTAACCCAGAGACCAAATGGCTGCAACAGTACCTAAGGAACGCCATGAACAAAATGAAAAAAGCCCAACAACAGCAGAGCTAAGAAGTCTGCCAGATGACAAGAGAATCTGACAGCCCACCGTCACAGATATGTACCATATAGTCCTCTGGCATGCTTGCTGACCCAGCACTTAACCTGCCAAATATGCATCCCCAGTAAATGACTCGGCAAAAGACCACCAGACCATCGTCGCCACCCATGTAGTCTTCTCTGTTAGCGCCAAGTGCAATTATATATGtatgactgtgttttttttacgttatgatatgtatatacaatgttttttatatatatcgtcttaaaaacagtaaagagaTATTTTTGGAGTCGTGTTTGCTCCTTGTTTGTTGTGTTATGTTGGGTTAGGCAGAACGGCATTGAGATAATGAGGCGTTTTGGAGCAAACATTCAAAactctgaaatatattttaatcttaGATGTAACAGAATATCTGACTTCACAATGGCAGGACTGAAGTCCTGACAACTCATATGCATGCAAGTGCTTTGACACGAAAAGAAGGGCATTGATTTTGAACCATTTCGTTATGTATTTTACTAGTTCATAGCTTAGATATCTGTAACAGCATAAACTGCATGTAAACGTTATATGgcatatatgaaaaaaaaagagtcacttgtttttgttcttgGAAAGGCAGGGTTACTTAGCCAAACAAACACGAACAGTTTAGACCTTGTATAGCCCAAACAATTTCTGACTTTGGGGAATGTAATTGGTTTTACTGGAAGGCATCTGTGCGCCGACAGAGTGTCTTTTGCAACACTCTGTAGATACCAAAACATCTGTGCTTGCAAACGTTAATTGACCGATCAGAGTGTGCGTAAAGAGCTTGGCGTCACAACATACTAAATGTTTCTTCACGCTCAGCAGAATTATGTCACGAACAGAGTCTGTTGTGCGTctgtcaacaaaacaaaagtagagGTTAGAGAATTTACTGCAAGTACTAATGAGCTAATTCACTCATTCAGTGATGATAACTAAATCACGGTAGGCATGataatctttttaaaacagCTGTGTTAGTGGAACATCTGAGGTAGACCTTGAGGCAGAACTAATTGACGTAATGACTACCTATATATAACAATGCACTTTATAACCCCTTGTGACTTttgaggaaaacaaaacagattctGAATGATGCCCATTACGTAGTGAATAGTTCTAGTGCCTAATGTTTTCTCTGTTTAGATGTAGTTATGACTGTATTGccaaatttattaaacatttgtatCTTCAGcatcatattttataattttgagtgggtttattttatattttggtggaATATTTGACACCTGTTTTAAGAGCAGTCaagattattcatttaaacatcaACAGCAGCTAAATAACTGAcatgtacataaaaaatacatgtcaataaatacattaaaaactgtaCTAAAACAATTAAGAAATATCTGACTTCTGAAATATAGaggcacaaaaatatttaaccacATAAAAAATGTCTCATAATCTCCCcagtaaaacataaatcaacaATTTTCAGCATCTAAGCATGTCTCGTGTTTCTCTTGGACAACTGTTTTGTCTAAAAATGTGAACACCAAACATATAGCAAAGTATGCCAATGACTTGTACCTCTCCAAAGAATACTAGTGTATGGAATTTGTGCTATATCACTGCCAATTTCATAACGTTGAGCCGTTAAAAGAACCagaccacacaaacacaaccctCAGGCACAAAATCTATATGGAAACATAATGCCTCTACATACTCTGTGCCTCTACAGGAGTCTGTGTACAGGATGAGGTTTAGAACCCCCCACCAGTACAGTACATAAATATCATGCACTCTTTGAAAGGGCCATTTCAGAATGCGGTTAAAGCcatattactaattaatatttttcaaatggaAAAGTAAGGGtagctattatatatatatatctatattacaACAAATTGCCAATATTCTCAACACTGTAAGTAACTGCATATACTGTCCTTCCATGCCTTTTTCATCCCACTTAATGTGAAAATTACTTCTGTGTATATGGCAGC
>XM_043255479.1
CGTGCGCGGATTTAACTCAGAGACGCGGTTGCTGCTGTCACAGTTGCTCCTGGATTCTACATTGCGCGGATCTCTTCTTCACACTGCAAACATGGATCTGAAAGTGATCGTAATATTCGCTCTGATGGCGGTCGTCATTCACGCACCCGTTTCAAATGCCAAGCCCATCAGCTTGGTAGAAAGATGCTGGTGCCGTTCCACAGTCAACACAGTCCCACAGAGAAGCATTCGCGAGCTCAAGTTCCTCCACACACCGAACTGCCCCTTCCAAGTCATTGCCAAACTGAAGAACAACAAGGAGGTGTGCATTAACCCAGAGACCAAATGGCTGCAACAGTACCTAAGGAACGCCATGAACAAAATGAAAAAAGCCCAACAACAGCAGAGCTAAGAAGTCTGCCAGATGACAAGAGAATCTGACAGCCCACCGTCACAGATATGTACCATATAGTCCTCTGGCATGCTTGCTGACCCAGCACTTAACCTGCCAAATATGCATCCCCAGTAAATGACTCGGCAAAAGACCACCAGACCATCGTCGCCACCCATGTAGTCTTCTCTGTTAGCGCCAAGTGCAATTATATATGtatgactgtgttttttttacgttatgatatgtatatacaatgttttttatatatatcgtcttaaaaacagtaaagagaTATTTTTGGAGTCGTGTTTGCTCCTTGTTTGTTGTGTTATGTTGGGTTAGGCAGAACGGCATTGAGATAATGAGGCGTTTTGGAGCAAACATTCAAAactctgaaatatattttaatcttaGATGTAACAGAATATCTGACTTCACAATGGCAGGACTGAAGTCCTGACAACTCATATGCATGCAAGTGCTTTGACACGAAAAGAAGGGCATTGATTTTGAACCATTTCGTTATGTATTTTACTAGTTCATAGCTTAGATATCTGTAACAGCATAAACTGCATGTAAACGTTATATGgcatatatgaaaaaaaaagagtcacttgtttttgttcttgGAAAGGCAGGGTTACTTAGCCAAACAAACACGAACAGTTTAGACCTTGTATAGCCCAAACAATTTCTGACTTTGGGGAATGTAATTGGTTTTACTGGAAGGCATCTGTGCGCCGACAGAGTGTCTTTTGCAACACTCTGTAGATACCAAAACATCTGTGCTTGCAAACGTTAATTGACCGATCAGAGTGTGCGTAAAGAGCTTGGCGTCACAACATACTAAATGTTTCTTCACGCTCAGCAGAATTATGTCACGAACAGAGTCTGTTGTGCGTctgtcaacaaaacaaaagtagagGTTAGAGAATTTACTGCAAGTACTAATGAGCTAATTCACTCATTCAGTGATGATAACTAAATCACGGTAGGCATGataatctttttaaaacagCTGTGTTAGTGGAACATCTGAGGTAGACCTTGAGGCAGAACTAATTGACGTAATGACTACCTATATATAACAATGCACTTTATAACCCCTTGTGACTTttgaggaaaacaaaacagattctGAATGATGCCCATTACGTAGTGAATAGTTCTAGTGCCTAATGTTTTCTCTGTTTAGATGTAGTTATGACTGTATTGccaaatttattaaacatttgtatCTTCAGcatcata

Function

symbol description
cxcl12a Enables chemoattractant activity. Acts upstream of or within several processes, including fin regeneration; nervous system development; and regulation of cell migration. Predicted to be located in extracellular space. Is expressed in several structures, including brain; mesoderm; myoseptum; neural rod; and sensory system. Human ortholog(s) of this gene implicated in breast carcinoma; diabetic angiopathy; human immunodeficiency virus infectious disease; and type 1 diabetes mellitus. Orthologous to human CXCL12 (C-X-C motif chemokine ligand 12).

NR:

description
chemokine CXCL12a precursor

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0090024 negative regulation of neutrophil chemotaxis biological_process
GO:0001764 neuron migration biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006955 immune response biological_process
GO:2000472 negative regulation of hematopoietic stem cell migration biological_process
GO:0050930 induction of positive chemotaxis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048842 positive regulation of axon extension involved in axon guidance biological_process
GO:0030239 myofibril assembly biological_process
GO:0031101 fin regeneration biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0008354 germ cell migration biological_process
GO:0030900 forebrain development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function
GO:0042056 chemoattractant activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137340 True 2370 lncRNA 0.38 4 11255631 11262620
XM_043255479.1 False 1624 mRNA 0.41 4 11255594 11261837

Neighbor

gene id symbol gene type direction distance location
cxcl18a.1 LOC107707282 coding upstream 38166 11215240 ~ 11217428 (+)
LOC122356105 LOC107588620,LOC107707271 coding upstream 40507 11213499 ~ 11215087 (+)
ppifa ppifa,LOC107668776,LOC107588732,LOC107564349,LOC107673899,LOC108442288,LOC108263515 coding upstream 103147 11149996 ~ 11152447 (+)
zmiz1a zmiz1a,LOC107588626,LOC108443181 coding upstream 108968 11033947 ~ 11146626 (+)
rps24 rps24,LOC107673958 coding upstream 262282 10990562 ~ 10993312 (+)
ercc6 ercc6,LOC107588615,LOC107668807,LOC107757150,LOC107708008,LOC107673869 coding downstream 24430 11287050 ~ 11302394 (+)
drgx drgx,LOC107588616,LOC107708289,LOC107668808,LOC107548637,LOC107673892 coding downstream 41444 11304064 ~ 11309190 (+)
vstm4a vstm4a,LOC107588614,LOC107707245,LOC107673948,LOC107548636,LOC107668767 coding downstream 66657 11329277 ~ 11337428 (+)
lrrc18a NA coding downstream 89352 11351972 ~ 11355204 (+)
si:ch211-223a10.1 si:ch211-223a10.1,LOC107707219,LOC107757147,LOC107673964,LOC107548634,LOC107588731 coding downstream 116524 11379144 ~ 11388193 (+)
G92767 NA non-coding upstream 51910 11202654 ~ 11203684 (+)
LOC122356274 NA non-coding upstream 233538 11004910 ~ 11022056 (+)
G92748 NA non-coding upstream 270949 10984238 ~ 10984645 (+)
G92746 NA non-coding upstream 272315 10982940 ~ 10983279 (+)
G92731 NA non-coding upstream 293898 10959420 ~ 10961696 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding downstream 105646 11368266 ~ 11368907 (+)
G92923 NA non-coding downstream 151603 11414223 ~ 11462116 (+)
G92952 NA non-coding downstream 246618 11509238 ~ 11509888 (+)
G92958 NA non-coding downstream 251857 11514477 ~ 11533930 (+)
G92962 rrp12 non-coding downstream 256000 11518620 ~ 11519343 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 37419 11213526 ~ 11218175 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 286680 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 835168 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 1005869 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1820989 9430178 ~ 9434605 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 126765 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 309040 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 341077 11603697 ~ 11604852 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 1169299 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 1239765 12502385 ~ 12535071 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) cxcl12a cxcl12 misc NC_047597.1 CM018543.1 16124627 ~ 16134002 (+)