G92841 (rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360)


Basic Information

Item Value
gene id G92841
gene name rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10989282 ~ 10993798 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU137420
cTTTATTGAACCTCTTCTGATAAAAAGTGAgcaaactcaagcatttttgaCGATCAGTTTCAAGGCTCgtgatttgctgctcattacTAATGTCACACGTTCATGTGCACAAGCTTTATTAAATCAGGACCAAGCCTGAGTGGACAAAAAGTTCACGATCAGCTTCTTGGTACCAGAAAACCCAGActggattgttttggttttgtcaaCTCAAAACTAATCTTGTAACCCAGAATTTGTTCAGCCATCATGGTACAGGCTCCAGGTGATGCCACAGAAATCAGATGTTGTGCTAACAGGTAGTCCGGTTCTGTTGTTGAAAAGTGCAGAGCAGTGGCTTCCCAGGCCCATAGTTGAGAAACAATACTATAAAGTGTAATAATCCCAACAGGTTTAGATAAACACTTATCAACAAGTTCCCATGCTACTAAACATTAACTAAACACAAACTTTGCATTTCTGATTGAGCACTCAGACATCATGAtccactttttttaaagaatttatttgatGACAACGTACAAGAACATTTTCAGGCCCGATGGTCTTCCCTGAAGGTCTTACTGTAAGAGGAAAGacaatatttcaattaattttctgCATTAACACTCAACTACAAAACTATTATACACAAACTACCCATAGAAAATCCCTAAATATGTAGATCAAGGACAAACTCTCACTTCAAGGGAAAGTATAACTGAGGGAGGGGTTGTTTCTGAATACTCCAGTGGGTTCAGTCAAACTTGCAGACATGCAGTCAAGTGGCTAGTTTACCTCAAATGAGTGAATGCTAACCACACACAGCATGCTACAAATTAGTAGATTTATAACAGTCAAATATGCTAACTGGAACTACTCAAATACACAAGTTCAAACATCTTTTTAATCTGTGTTAGAAACACAGGATCTTTAAAATATCTGCAAGTGAGGTGAGGCATTGGGATTGAACATGCAAAGCACTTCAAGTAAGTGGTAAAAGTGGATCACATCAGCACACCATGCCGATTTCCACTCTACCTTCTCCTGAAACCTCAAGCCTTTCACTTCTGTAAACATCCCAGGGAGGCAAAAGAGGGCAAAAGATTGGACAAAGATGAGAACTTTCAACTAACACTATCAAGTTCTAAAATTGCTCTCTGAAATTTTCATGGTGGGAACGTAAACTAAGCTCCATCACATGAATTTGTAAACCATTTTCAGAGAGCAATTGCAATATAGCTTACTCTACTTCACTACAGTGTGTAGCACTTCACTGTTAGGGAGCAGACTAGTTGCACTACTCGAGTGGGATTAAACAGTTGCCTGTAAGTATTACTTCCAAGCACATACTGGTCAATAGCATTAGCCATCAACATAGCTAAATGTTTGGAGTTAACTTTACAGATCACTTCAGACTCTCCTTCCACAGCAGTTAGTCTACTTGTGAAAGTGGTTACCTTCTATAATCCAGATGTACATTTGATAAGAGGAGGAAAGATGACAAGTTACACATTAAAACCGAAGACATGATGACGAAACAAACATCTATGATGAACAACAGAAATAAGTGCACTGAATCCTAAACAAGAGCtcaaagcaaaaagcaaatattaccTTCTTGCCAGCAGCACCAACAGAGGCTTTCTTAATGCCTCTAACTTTCTTCATTCTGTTCTTGCGTTCCTTGCGCTGCTTCCTAGATGTCTTTTTCTTCTCATAGAGGCCATGCCCTTTGCAGCCTGTATTTGGGCTCATTCTTCTTGGCGTAGTCCAAAGAGTCATAGATCATGCCAAACCCTGTTGTTTTGCCACCGCCAAACTGAGTTTTGAAGCCGAAGACAAACACTACATCCGGGGtggttttgtacatttttgcaagCTTCTCCCTGATCTCTGTTTTGGGGACTGTTGCTTTGCCGGGATGCAGGACATCTACAACCTGAAACGATAACGGAAATGTAAGTCAGCAAATGTGTAAAGTGCaaac
>TU137426
CTGAAATACAATGCATATTGAAGCCACAGCCTttctatttcaattaaattcacCATGCAATCCTACAAGCATCATGAGCAGCTTACCCTTTGCAGCCTGTATTTGGGCTCATTCTTCTTGGCGTAGTCCAAAGAGTCATAGATCATGCCAAACCCTGTTGTTTTGCCACCGCCAAACTGAGTTTTGAAGCCGAAGACAAACACTACATCCGGGGtggttttgtacatttttgcaagCTTCTCCCTGATCTCTGTTTTGGGGACTGTTGCTTTGCCGGGATGCAGGACATCTACAACATTTGCTTCCTTTGAAGCAGCCGGTTTGTCATAAACTTTCTGGTCCTGACGGTGACTGTCTCGTTCtgcaaagaaacatttgttaaaaaaaaactaagaaatgaaaacagttAATCAGTCGAAACATTTCAGGTTTCATCTATGAGCTGGACATTTCGTATCCTAAACATTTACTTGACAGCCACTTActgtgcaaaaataatattagtatttattagcGATATTCCAAAGGAATCGTACGCATGTTATATCGATGCAGACAGAAACCCGTGCAGTTAAAGACACTTCCACTTTAGCACGAAACATGGTTAGCACTTTAGCTAACGTTACTTCAGCTTCATGAGACGAATACAAAATACGGGGGTCAACTGAAGCTTTCCAATGTTATATCGCTCCTATTTCAGGTCTAAGGAAAAAACGTATATGGCCgcaatgtaattttaattctCCTAGACTCTGCTAGAGTAGCACGATGGTATAAAACGAGACACCACCGTCTTAATCTACCGAAGAGTTCGTTTGTATACATTTCATTCTCCAAATGAATGACCATATTAATTGCTACATACATGTAGTGTGCTTTATGGCAACAATGTCAATATAATATCGCTGGATGGAGAAGATTTAATCggattttcataattatttgtcCACAGTCGACTCACCATCTTGGCGTCGGCTCGCTTAGGGacgaggaaaagaaagaaggaccTGTAGGTGCCCGAGAATATGCCTGAGCGGTGGTATGGTATATTAAGGTACGACTGAGATGTCTTCTTCTTGTCTGGCAGACTTACAAAAAAGTACCTTGTCCTTTGTCGCTTTGTCCTTAACATCGACACGTTGACTGGACCGCctaatgcaaaatgaaaaggTGGACAAGCAGTTCTTCTGGAAGTTCTcattcataaatgcataaatgataGGATTGTTGAATGAATTTGAAAATCCTATGGCCTGTGCAACAGCAATAAGCATATTGATTGTGAT

Function

symbol description
rps24 Predicted to be a structural constituent of ribosome. Acts upstream of or within definitive hemopoiesis and primitive hemopoiesis. Predicted to be located in ribosome. Human ortholog(s) of this gene implicated in Diamond-blackfan anemia 3. Orthologous to human RPS24 (ribosomal protein S24).

NR:

description
40S ribosomal protein S24 isoform 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137420 True 1969 lncRNA 0.40 2 10991391 10993798
TU137426 False 1286 lncRNA 0.40 3 10989282 10991734

Neighbor

gene id symbol gene type direction distance location
ppa1b LOC107716302,LOC107564343,LOC107673928,LOC107668792,LOC107708308,LOC107588733 coding downstream 24884 10959441 ~ 10964398 (-)
sar1ab sar1ab,LOC107668793,LOC107708324,LOC107564344,LOC107588735,LOC107673926 coding downstream 30665 10955438 ~ 10958617 (-)
tysnd1 LOC107673878,LOC107716300,LOC107708039,LOC107578377 coding downstream 34139 10951451 ~ 10955143 (-)
trmt2b trmt2b coding downstream 74526 10913050 ~ 10914756 (-)
scdb LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302 coding downstream 77453 10906055 ~ 10911829 (-)
zcchc24 zcchc24,LOC107564348,LOC106577169 coding upstream 159793 11153591 ~ 11185986 (-)
wu:fj13e08 LOC107707292,LOC107668826,LOC107588624 coding upstream 192640 11186438 ~ 11192124 (-)
LOC122356818 NA coding upstream 198507 11192305 ~ 11195431 (-)
LOC122356100 si:dkey-275b16.2,LOC107588698,LOC107708014,LOC107757157,LOC107564350,LOC107668834 coding upstream 200688 11194486 ~ 11199080 (-)
tmem72 tmem72,LOC107707262,LOC107757114,LOC107564361,LOC107673868,LOC107668804,LOC107588619 coding upstream 225805 11219603 ~ 11223816 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding downstream 587 10988414 ~ 10988695 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding downstream 2762 10986302 ~ 10986520 (-)
G92836 LOC107668836 non-coding downstream 11823 10976533 ~ 10977459 (-)
G92829 NA non-coding downstream 41551 10945204 ~ 10947731 (-)
LOC122356733 NA non-coding downstream 189418 10787586 ~ 10799864 (-)
G92848 NA non-coding upstream 152380 11146178 ~ 11149252 (-)
G92842 NA non-coding upstream 263282 11257080 ~ 11262637 (-)
G92934 arhgap22,LOC107588697,LOC107668831,LOC107708000,LOC107673870,LOC107548604 non-coding upstream 416832 11410630 ~ 11411439 (-)
G92935 NA non-coding upstream 418385 11412183 ~ 11413253 (-)
G93062 NA non-coding upstream 631000 11624798 ~ 11625140 (-)
G92819 NA other downstream 53951 10924944 ~ 10935331 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 354716 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 797516 10174413 ~ 10191766 (-)
G92267 NA other downstream 1873731 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2941381 8043565 ~ 8047901 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 206754 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 531605 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 650132 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 777630 11771428 ~ 11799032 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other upstream 1284656 12278454 ~ 12293594 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G67534 NA non-coding CM030127.1 CM030127.1 42483585 ~ 42484218 (-)