G92962 (rrp12)


Basic Information

Item Value
gene id G92962
gene name rrp12
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11518620 ~ 11519343 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU137599
TTATGTGCCGCAGAGTTTGACTCCCAGTAGCGCTGTACTTTTCTGAAAGTGAGATTGGAGCAGTCCGACAGTCCACTGAGAAAAGTCCCAGAGGTTTTCTCTGTCAGAGCTTGATCCTCCACGGAATCACATGCTTCCATGGCATCACTGCTTCTCTGCAGAGATCCTTCCTGAAGCTCATTGTGGAGTTTCAAGGCATCTACTGTCAGAtcacttttttCCAGAGGGACGGCTGAAATATCTGCTTCTCGCTGCCTTTCGATAGCGACTTGTCTCCGGATTGGAGTCACTACTGTGACCTTTCTTCCATCGCCTGATTTTCTGGGCTGTTCCGGATCGGAGTTTTCCGGACTTCACCATTTTAGCAGGTGAAAATCCTTACAGCTGAGCAGACACGTTTGCCTCTCCAGTCAGCGTGTCGCGCTTAGGTTTGCGTCATCAGC

Function

symbol description
rrp12 Predicted to be involved in rRNA processing. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; intestinal bulb primordium; musculature system; and nervous system. Orthologous to human RRP12 (ribosomal RNA processing 12 homolog).

NR:

description
PREDICTED: RRP12-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137599 True 443 lncRNA 0.50 2 11518620 11519343

Neighbor

gene id symbol gene type direction distance location
antxr1d antxr1d,LOC107673963,LOC107708254,LOC107668779,LOC107588727,LOC107757100,LOC107548602,LOC108263270 coding upstream 10681 11486772 ~ 11507939 (+)
gdf10a gdf10a,LOC107708281,LOC107668782,LOC107588730,LOC107673887,LOC107757113 coding upstream 37624 11477208 ~ 11480996 (+)
ptpn20 ptpn20,LOC107707196,LOC107668813,LOC107673913,LOC107757144,LOC107588696 coding upstream 63909 11426414 ~ 11454711 (+)
si:ch211-223a10.1 si:ch211-223a10.1,LOC107707219,LOC107757147,LOC107673964,LOC107548634,LOC107588731 coding upstream 130427 11379144 ~ 11388193 (+)
lrrc18a NA coding upstream 163416 11351972 ~ 11355204 (+)
mettl18 mettl18,LOC107707167,LOC107588607,LOC107668810,LOC107548629,LOC107673950 coding downstream 12512 11531855 ~ 11533395 (+)
tdrd9 tdrd9 coding downstream 21779 11541122 ~ 11557216 (+)
pcnx4 pcnx4,pcnxl4,LOC107707124,LOC107757138,LOC107588690 coding downstream 74822 11594165 ~ 11602678 (+)
ppm1aa ppm1aa,LOC107707101,LOC107588600,LOC107757136,LOC107548624,LOC107673900 coding downstream 87589 11606932 ~ 11621476 (+)
six6a six6a,LOC107588601,LOC107707115,LOC107668781,LOC107743981,LOC107673886,LOC107548626 coding downstream 116312 11635655 ~ 11637883 (+)
G92952 NA non-coding upstream 8732 11509238 ~ 11509888 (+)
G92923 NA non-coding upstream 56504 11414223 ~ 11462116 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding upstream 149713 11368266 ~ 11368907 (+)
G92767 NA non-coding upstream 314936 11202654 ~ 11203684 (+)
LOC122356274 NA non-coding upstream 496564 11004910 ~ 11022056 (+)
G92965 NA non-coding downstream 6014 11525357 ~ 11529080 (+)
G92968 NA non-coding downstream 23710 11543053 ~ 11558240 (+)
G92974 NA non-coding downstream 46687 11566030 ~ 11618812 (+)
G92984 NA non-coding downstream 109016 11628359 ~ 11628566 (+)
G93001 NA non-coding downstream 208480 11727823 ~ 11728484 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other upstream 105105 11389385 ~ 11413515 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 256000 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 300445 11213526 ~ 11218175 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 549706 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 1098194 10416240 ~ 10420426 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 52317 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 84354 11603697 ~ 11604852 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 912576 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 983042 12502385 ~ 12535071 (+)
G93296 rrbp1 other downstream 1052288 12571631 ~ 12575212 (+)

Expression


Co-expression Network