LOC122357045 (LOC107654926,LOC107705370,LOC107588681,LOC107675516)


Basic Information

Item Value
gene id LOC122357045
gene name LOC107654926,LOC107705370,LOC107588681,LOC107675516
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12431919 ~ 12436643 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU137947
GGAAGACGTATGTGACGTGTATACTCTGTTAGAAGTTTGCTCTCGTCGAAAGGTCTTGAACATTTACTAAGatttaaagactttttctttctcacagCATGCAGCCAACGAGCCTCTTTTTTGGTAAGTGTTCCTGAAAGGCGTTTGATGGCAATCCGAGGTCATCCGGCTGTACTGGGCTGTGAGTTCACATCTGATTCTGACCTGTCCAGTTTGGTGGTTACCTGGCAACGTCAGGAGGACTCACAGAGCTTGGCAAAGGAAATGCCTCTCTTAGAATATATCCAGTTCTACCAAAGGATGCAGGCCAGTATCTGTGTCAGctCTTTATTCAGAGCCCAGGTTGGGAATTCATGTGAACTCCACCGTTGTGACACTGCAGTTTGAGACTGAGGGTTTCCCCAAACCTGAGGTGATCTGGCTGGGGGAACAAAACCAGAGCCTCAGCTATCACCTGGACATCCAAGACCAGACAGAAGATGGccttttttacataaaaagcagTTATGAGGCACAAAAGCCAGTGATTAATGTCACATTTACACTAAAGAACCACCTTCTGAACCAGAACCTGCAGAGATCGGTGTTCCTCAGCTATGatgaGGATGGAGATGGCCACACTGCGATCATTATTCTCTCAGTACTGATTGTCATTCTTTTTGCTGTTGTGATCTTTGTACtattaagaaaacaaataaaatcctaCCTATGATCCTCCAATCACTTGTCATTACTATGGTCCTTTCTGGCATGttgatccaaaataaaacttcttGCATTGTTTAG
>XM_043256225.1
aatgtttacatgcgggcgggagcgggacaaacttgaatattgcgggTGGGAGcggaaaaaaataatctatattgttgcgggagcgggactgaaaaatctgtcccaCGCAGGTCTCTACCACAAAGACATCAAGAAGACAACTACATCGCgttgcagttaaaaaaaacttctcAATTCATGGGTTTAAATCTCAAAGGCGTTTATTTGTGTTGCTCCTGGATTATCAGTGTCACCTCTTTTTTGGTAAGTGTTCCTGAAAGGCGTTTGATGGCAATCCGAGGTCATCCGGCTGTACTGGGCTGTGAGTTCACATCTGATTCTGACCTGTCCAGTTTGGTGGTTACCTGGCAACGTCAGGAGGACTCACAGGTCGTCCACAGTTTCTATTATCAACAGGACAAATTGGACCGACAGAGTCCCGAATATAGCAATCGAACCTCATTATATATTTCAGAGCTTGGCAAAGGAAATGCCTCTCTTAGAATATATCCAGTTCTACCAAAGGATGCAGGCCAGTATCTGTGTCAGGTGAGCAATTTTAAAGGGACAGGAAAAGGACTGATAGAATTGGACTATGGAGctCTTTATTCAGAGCCCAGGTTGGGAATTCATGTGAACTCCACCGTTGTGACACTGCAGTTTGAGACTGAGGGTTTCCCCAAACCTGAGGTGATCTGGCTGGGGGAACAAAACCAGAGCCTCAGCTATCACCTGGACATCCAAGACCAGACAGAAGATGGccttttttacataaaaagcagTTATGAGGCACAAAAGCCAGTGATTAATGTCACATTTACACTAAAGAACCACCTTCTGAACCAGAACCTGCAGAGATCGGTGTTCCTCAGCTATGatgaGGATGGAGATGGCCACACTGCGATCATTATTCTCTCAGTACTGATTGTCATTCTTTTTGCTGTTGTGATCTTTGTACtattaagaaaacaaataaaatcctaCCTATGATCCTCCAA
>XM_043256226.1
TGCGAGGTTTTTTCTTTTCCGCTAGCTAGAGGAAGACGTATGTGACGTGTATACTCTGTTAGAAGTTTGCTCTCGTCGAAAGGTCTTGAACATTTACTAAGatttaaagactttttctttctcacagCATGCAGCCAACGAGCCTCTTTTTTGGTAAGTGTTCCTGAAAGGCGTTTGATGGCAATCCGAGGTCATCCGGCTGTACTGGGCTGTGAGTTCACATCTGATTCTGACCTGTCCAGTTTGGTGGTTACCTGGCAACGTCAGGAGGACTCACAGGTCGTCCACAGTTTCTATTATCAACAGGACAAATTGGACCGACAGAGTCCCGAATATAGCAATCGAACCTCATTATATATTTCAGAGCTTGGCAAAGGAAATGCCTCTCTTAGAATATATCCAGTTCTACCAAAGGATGCAGGCCAGTATCTGTGTCAGGTGAGCAATTTTAAAGGGACAGGAAAAGGACTGATAGAATTGGACTATGGAGctCTTTATTCAGAGCCCAGGTTGGGAATTCATGTGAACTCCACCGTTGTGACACTGCAGTTTGAGACTGAGGGTTTCCCCAAACCTGAGGTGATCTGGCTGGGGGAACAAAACCAGAGCCTCAGCTATCACCTGGACATCCAAGACCAGACAGAAGATGGccttttttacataaaaagcagTTATGAGGCACAAAAGCCAGTGATTAATGTCACATTTACACTAAAGAACCACCTTCTGAACCAGAACCTGCAGAGATCGGTGTTCCTCAGCTATGatgaGGATGGAGATGGCCACACTGCGATCATTATTCTCTCAGTACTGATTGTCATTCTTTTTGCTGTTGTGATCTTTGTACtattaagaaaacaaataaaatcctaCCTATGATCCTCCAA

Function

NR:

description
PREDICTED: CD276 antigen-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137947 False 786 lncRNA 0.44 5 12431949 12436643
XM_043256225.1 True 977 mRNA 0.44 4 12432950 12436577
XM_043256226.1 False 887 mRNA 0.44 4 12431919 12436577

Neighbor

gene id symbol gene type direction distance location
dcdc2b LOC107654928,LOC107588713,LOC107724332,LOC107675534 coding upstream 2795 12423676 ~ 12429124 (+)
iqcc iqcc,LOC107705368,LOC107588566,LOC107655007 coding upstream 8575 12420615 ~ 12423344 (+)
ccdc28b ccdc28b,LOC107675524,LOC107585497,LOC107705395,LOC107588714,LOC107654929 coding upstream 11450 12414868 ~ 12420469 (+)
tmem39b tmem39b,LOC107675583,LOC107705392,LOC107655009,LOC107585496 coding upstream 17650 12406911 ~ 12414269 (+)
oip5 oip5,LOC107655012,LOC107705396,LOC107588571 coding upstream 30311 12399664 ~ 12401608 (+)
brf1a brf1a,LOC107655005,LOC107675573,LOC107705399,LOC107724496,LOC107588563 coding downstream 13928 12450571 ~ 12485662 (+)
LOC122357113 NA coding downstream 51938 12488581 ~ 12493739 (+)
cfl1l NA coding downstream 120500 12557143 ~ 12559518 (+)
ephx5 ephx5,LOC107724402,LOC107585505,LOC107675570,LOC107705353,LOC107654996 coding downstream 169200 12605843 ~ 12610037 (+)
macrod2 macrod2,LOC107600572 coding downstream 177134 12613777 ~ 13074499 (+)
G93267 NA non-coding upstream 46301 12385307 ~ 12385618 (+)
G93219 NA non-coding upstream 51068 12379709 ~ 12380851 (+)
G93222 NA non-coding upstream 57788 12363065 ~ 12374131 (+)
G93200 NA non-coding upstream 164853 12202742 ~ 12267066 (+)
G93190 rock2,LOC107588686,LOC107681539,LOC107707968 non-coding upstream 242881 12186068 ~ 12189038 (+)
G93280 NA non-coding downstream 11731 12448374 ~ 12450446 (+)
G93295 NA non-coding downstream 131841 12568484 ~ 12569100 (+)
G93285 NA non-coding downstream 159279 12595922 ~ 12597301 (+)
G93306 NA non-coding downstream 165548 12602191 ~ 12602541 (+)
G93474 NA non-coding downstream 727394 13164037 ~ 13164313 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other upstream 827067 11603697 ~ 11604852 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other upstream 839319 11571660 ~ 11592600 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other upstream 1018404 11389385 ~ 11413515 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 1169299 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 1213744 11213526 ~ 11218175 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 65742 12502385 ~ 12535071 (+)
G93296 rrbp1 other downstream 134988 12571631 ~ 12575212 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other downstream 150243 12586886 ~ 12588998 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other downstream 697830 13134473 ~ 13158440 (+)
G93613 NA other downstream 1302964 13739607 ~ 13909603 (+)

Expression


Co-expression Network