LOC122356414


Basic Information

Item Value
gene id LOC122356414
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12557077 ~ 12597302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU138208
ACGACGCCCCGCCCCTAAACGCAGAGCTACAGTGTGACGGTTGTTTATATAATCTTGGCGAGCAAATTTGGTTACAGTTTGTCGACATAACAAGGAAGAATCAGCATAGTGTGAGTCAAGTAACCCGGTTTCAGTATGTATTTTAAGATGATTGTGCCGTTTTTGGCCATGATTTTGACCGTGGCGAACGCTGGGATGACCGGAGGCCTAATGGATACAGACATGGAAGATGAAGGAGCTCAGAATGCGTTACAGTTCGCAGTGGCCCACTACAACAGACAAAGCAACGATGCGTTTGAGAGTCGGGTTTCCGAGGTCATCAGTGTCCAAAAACAAGTTGTGTCTGGCCTGAAATACATCTTCAATGTGAACATCGGCAGAACCAGCTGCAGAAAGGGTGACGTTGAAACCCTGTGTGCCATTCATGAGGATCCCAGTGTTGCAAGGGTCACTCCATGCAAAATAACAGTTTGGAGCCAGCCATGgaaaaagtacattaaagtCCTTGAAAACAGCTGCCTGCAGTAGagcttgtttttaatgcagtttacagctttttttaacattcatgcAGCAATAAAATGTACTTGCTATGGGTAATAATGGTAAACCTTAAGTCTTTGCTCTTGATAAAAACCAATTTTTTGATAACAtacacatcatcaacacataaTTGTGTAATCTCATTAGCCATTGCTCCGAAAAAGCTACTTGTAGGAAtttctaaatgataaaatgcatgtttctgTATTACTTCCTACTTTACTAATAAACCATGGTTAATCTCAATATaaaaaaaaaaaaaaaaaaacatttcataatgcCTAACATGTCCAGAATTGTTGGTACCTTTTGTGCAATTGCATGTTAAATAAGAAACGCATTAAAAGTTTTTGGAAAAtcacatgattttatttttcaaatacacAGTCCAATTGTAATGCCTACCCCAGGTTTTCTGCTGTCATTATACTATATTTGTTGGTATTtgcttaataataatcattaattgTAAATGTGGAATAAATACGAATTCTcaattgattaaatgtaaaaaaaaaactgattccaatacaaatgaaatacaaagtttattagcatatattttatctcttatttatttattttttttttttgtcataacaGACTGATAAGAGGGCTGTGGGGTCATTGGTCTGATTGCTCTTAATTTTACACAAGCTGCCCCTCCAAAGACTTTACTGTGTCCCTTCCACCAAGTTTCTCCACAAGGCATGATGGGTCTCTGTCTCCAGGTTCATTAATTTGCCACTCATATTTCAAACCTATAGGGGAAAAAGCACaggaattatttatttaatttactcttaattgtctataaagctgctttggaaTCATGTATACTGTAAGTGCGTTttacaaacaaactaaaatattaagtgtAACACTAAAAAGACCATAGCCGACCTTGCAGTTTGTTCTTAAGAGCAACCATTGAACTTGCATAGACCATTTTGCTCTTTAATGGGGCAGATTCAGGGGCCGATAAGATGAAGACCAGGTCCTCCTTCACGCTCTCCTTGTTCACATAGGAGCAGTCGTACAGGCCGTAGCGGCAATCTTTGGGAGGAAACTTATCGAGGATCTTCTTTAAGACATCTGTGGTCCCCACATCTTTGACTGTCAGGCAGTTGTCATGGTCCACCACGATACTCTTTTGGTCTTTGCTCAAACACATGACCAGAAGTTTTAGCCTTTCCCCAGCATCAGTTCCTGCATGACGCACCCGGATTAAGTCATACTTACTTATCACCTCATCACTGATGGCTACACCTGAGGCCTGGGTGACACGGGGAAGAATATTGACAAAACATGCAGAAGTGATAACTCTACAATTGAACACTTAAGTAGGATGGCATTTTCTTCTATCCGGATGATTTAATGCAGATTGTTGTATAAACCCCATAAAATGATCTTCATTAGATTAGGCAGACATGTGAATATCGCTATacaatttttaatgtatattccATAGCTATTTACCATCTTTAGAAATAGTTCAAGATATGAGGTGAAAATATGAACCAGTCTGCCTTCGCATTCCATTCCTTTACAAACAAGTTGAAACAAGAAGCCGAGTTACACCTCAAAACACTCTGGTGTGAGGAAACTCAGGAATGTCTCTGAATATCTTTTTGGTAACACAcactattgttttaaattgcacatgctgcaatagtatttttattccaGCTTAGCAGACCTAGCCAGACTTTCAGCTCACACAGGAACCGCTATTACTGCATTATTCAATGCTTTAAAGATTCAGCCAAGTCAAGAAATAGTTATAAATCTCatgaccttttttcttttattagttCATTTAGATTAGTTCACGATTAGTTAAAGCCATAAAAATCGCAGCAATGGGAATAACGTTGtttcaaatatgtaatttaGCATGACACAGCCGGTTTTTACCAAATGCTTGAACGGCATGCAAAAACGTACGTTGAAATAAAACTGCCCGAGTCTGAGGACTTACCATGGCTCACGCTTGCTCTGAAACGGAGGAAAGAAGCACGTCGTTGCCTTGCAGAGTGAAGAAGAGTCTCAGGGGCGCGGATCTAAACCCACCCTCTTCAGAACAGACCAGTCCCCGATGACCCGGCTCTCTACCTGCTGGCTGCGTTGCTGCAAACACTTCTAACTACGGGGTGGCTGTGTTAAATATCCTGTCATCGcccaattatttatattttgcgtTTATGATAAGGAAGCCATAAAAGTGATGCTTTATGTCATGTAAACGCTCAGGTGAGTCAGATGCAGTTTGGAGTTGACGACTGAACACAACAGCCTTATAAGGAAGACGGAATCTGACATAAACCTTATTTGGC
>XM_043255092.1
CCCTAAACGCAGAGCTACAGTGTGACGGTTGTTTATATAATCTTGGCGAGCAAATTTGGTTACAGTTTGTCGACATAACAAGGAAGAATCAGCATAGTGTGAGTCAAGTAACCCGGTTTCAGTATGTATTTTAAGATGATTGTGCCGTTTTTGGCCATGATTTTGACCGTGGCGAACGCTGGGATGACCGGAGGCCTAATGGATACAGACATGGAAGATGAAGGAGCTCAGAATGCGTTACAGTTCGCAGTGGCCCACTACAACAGACAAAGCAACGATGCGTTTGAGAGTCGGGTTTCCGAGGTCATCAGTGTCCAAAAACAAGTTGTGTCTGGCCTGAAATACATCTTCAATGTGAACATCGGCAGAACCAGCTGCAGAAAGGGTGACGTTGAAACCCTGTGTGCCATTCATGAGGATCCCAGTGTTGCAAGGGTCACTCCATGCAAAATAACAGTTTGGAGCCAGCCATGgaaaaagtacattaaagtCCTTGAAAACAGCTGCCTGCAGTAGagcttgtttttaatgcagtttacagctttttttaacattcatgcAGCAATAAAATGTACTTGCTATGGGTAATAATGGTAAACCTTAAGTCTTTGCTCTTGATAAAAACCAATTTTTTGATAACAtacacatcatcaacacataaTTGTGTAATCTCATTAGCCATTGCTCCGAAAAAGCTACTTGTAGGAAtttctaaatgataaaatgcatgtttctgTATTACTTCCTACTTTACTAATAAACCATGGTTAATCTCAA

Function

GO:

id name namespace
GO:0010466 negative regulation of peptidase activity biological_process
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138208 True 2879 TUCP 0.39 5 12557077 12597302
XM_043255092.1 False 777 mRNA 0.41 3 12595926 12597290

Neighbor

gene id symbol gene type direction distance location
btbd6a btbd6a,LOC107724364,LOC107588564,LOC107705400,LOC107655006,LOC107585501 coding downstream 95098 12457871 ~ 12461979 (-)
LOC122356084 LOC107705397,LOC107654925,LOC107588565,LOC107675586 coding downstream 112199 12441039 ~ 12444878 (-)
nusap1 nusap1,LOC107585493,LOC107724270 coding downstream 157549 12395781 ~ 12399528 (-)
rtf1 rtf1,LOC107655008,LOC107588567 coding downstream 165328 12379697 ~ 12391749 (-)
golga5 golga5,LOC107588574,LOC107705390,LOC107585491 coding downstream 177860 12373606 ~ 12379217 (-)
LOC122356399 LOC107675571,LOC107654995,LOC107585506,LOC107724409,LOC107600571 coding upstream 12870 12610172 ~ 12612682 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562,LOC107585510,LOC107724457,LOC107662813 coding upstream 94092 12691394 ~ 12702158 (-)
kif16bb kif16bb,LOC107654912,LOC107600573 coding upstream 500389 13097691 ~ 13129712 (-)
ism1 ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810 coding upstream 569137 13166439 ~ 13179453 (-)
sptlc3 sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357 coding upstream 584035 13181337 ~ 13204232 (-)
G93394 NA non-coding downstream 22009 12533986 ~ 12535068 (-)
G93392 jag2a,LOC107654986,LOC107705348,LOC107724379,LOC107675567,LOC107600569,LOC107585503 non-coding downstream 23191 12531981 ~ 12533886 (-)
LOC122356854 NA non-coding downstream 150144 12401671 ~ 12406933 (-)
LOC122357111 NA non-coding downstream 310137 12121940 ~ 12246940 (-)
G93315 NA non-coding downstream 390179 12114926 ~ 12166898 (-)
G93460 NA non-coding upstream 507777 13105079 ~ 13105684 (-)
G93470 NA non-coding upstream 559628 13156930 ~ 13158437 (-)
G93471 NA non-coding upstream 564843 13162145 ~ 13162370 (-)
G93472 NA non-coding upstream 565187 13162489 ~ 13162727 (-)
LOC122356418 NA non-coding upstream 611108 13208410 ~ 13224536 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other downstream 126299 12429197 ~ 12430778 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 263483 12278454 ~ 12293594 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other downstream 758045 11771428 ~ 11799032 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other downstream 909042 11643930 ~ 11648035 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other downstream 1024620 11525403 ~ 11532457 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other upstream 712650 13309952 ~ 13325051 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other upstream 923111 13520413 ~ 13558834 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other upstream 967120 13564422 ~ 13568025 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other upstream 1095724 13693026 ~ 13718314 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 1300956 13898258 ~ 13904702 (-)

Expression


Co-expression Network