G93485 (sptlc3,LOC107705357,LOC107662809,LOC107654988,LOC107600566)


Basic Information

Item Value
gene id G93485
gene name sptlc3,LOC107705357,LOC107662809,LOC107654988,LOC107600566
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13187585 ~ 13191795 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU138346
tttttctgtgaactactcctttaagttTAACAAATTACTATaacataaatcatttaatgTTCTTGAAAGATTATGTGCAACAAagccacatttatttttatcgagaatacagaaaaaactgtaataatttaaaatatgatttttaaaaaacgttttttaatttttatcaattttgtatttttttaaatgttatttattcctgtcatggcagctattactccagtttccagtgtcacatgatcctttagaaatcattctcagatgctaatttgctgctcaagaaatagtttttgctactttttgtggaaaattttaaagaaaagaaaaattacccctcattttactcaccccaaatttaattttcttctttcagacgaacacagtttaaaatgtaaccTGGTTATAtccgatttacagagcttcaaaataatggccactatccacaagcattactaagcttggaagagccaggataaacttttaaaaaatacttgactatgtttgtctgaaagaagaaaatcatataCACTTAAGATGAGTTCGAGGtcagtaaaatatggggtaattttacatttttggggaactatttctttaacgcTGCTCTTTAGTATTCCCTCCTATCAAGGTGTGAGCTGCAgtgagattaaaaacaaacataatgtATTCTCTAAAACCATAAACATATGGATTAATGCATTATCAAAAACAGAAGACAGCTTGGGAAAACCCTTTTAACATCTGGTGCCATTCTGCTGATTCCTAATACCTGGAAATATGTGACTTTTCCTTGACTTAAGGTCTATAAGACCTTTAAGCCAGTCCTGTATTTTATTGAAATCTGTTTTCCATGAGTTatacgctgtaaaaaaaatatatttatacagttgTTAAATCCATGTGATTCCCCACATTTAGGACATGTTGGGTGGAGAATTTCAGTGTGTAATGACTGACTAGTTTGAAATCAACAACCTCTGACTGTTTTATTTAGTCATGTGACTTTCTAAAATAAGTCTCTTAGTATAGCTTTAGTGCctatatattgctttttataAACCAACCTTCTGTTGTTCCATCGACACCcatgatgcatttaattgcCCTGATGATCTGCTCCACCACAGGTGGGGACATGGCTGTAGCGTACACCGCACTGTGTGAGTGACTCCGCAGATAATCCACTAACtcctCTTTTTCCCAGCTATGTACCCGCCAGCAGCCCCGAAGCTCTTAGTGAAGGTGCCCATAAGAACATCCACTTCTTTGGGGTCTACCCCAAAATGTTCTGTAACCCCTCGACCTGTGAGCCCCACAGCCCCAATGCTGTGGGCCTCGTCGAGGTACAGATAAGCCTTGTACTTTTTCTTTAGTGCTAAGATCTCTGGCAACCGGACTAGAGAGCCTTCCATactgaaagGCCCTCCACCATGATGAGGATCTTCTTCCAGGCACGATGGGTACGAG

Function

symbol description
sptlc3 Predicted to enable serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and sphingosine biosynthetic process. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of serine C-palmitoyltransferase complex. Is expressed in EVL; gut; periderm; and pronephric duct. Orthologous to human SPTLC3 (serine palmitoyltransferase long chain base subunit 3).

NR:

description
serine palmitoyltransferase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138346 True 1464 lncRNA 0.37 3 13187585 13191795

Neighbor

gene id symbol gene type direction distance location
macrod2 macrod2,LOC107600572 coding upstream 113086 12613777 ~ 13074499 (+)
ephx5 ephx5,LOC107724402,LOC107585505,LOC107675570,LOC107705353,LOC107654996 coding upstream 577548 12605843 ~ 12610037 (+)
cfl1l NA coding upstream 628067 12557143 ~ 12559518 (+)
LOC122357113 NA coding upstream 693846 12488581 ~ 12493739 (+)
brf1a brf1a,LOC107655005,LOC107675573,LOC107705399,LOC107724496,LOC107588563 coding upstream 701923 12450571 ~ 12485662 (+)
jag1b jag1,jag1b,LOC107655002 coding downstream 302024 13493819 ~ 13521130 (+)
mkks mkks,LOC107683876 coding downstream 367298 13559093 ~ 13563325 (+)
wdr27 wdr27,LOC107739896,LOC107585515,LOC107683903 coding downstream 389431 13581226 ~ 13617273 (+)
thbs2a thbs2a,thbs2,LOC107705413,LOC107654977,LOC107739867 coding downstream 434803 13626598 ~ 13645581 (+)
psme4a psme4a,LOC107602941,LOC107654976,LOC107679520,LOC107739869 coding downstream 459113 13650908 ~ 13675048 (+)
G93474 NA non-coding upstream 23272 13164037 ~ 13164313 (+)
G93306 NA non-coding upstream 585044 12602191 ~ 12602541 (+)
G93285 NA non-coding upstream 590284 12595922 ~ 12597301 (+)
G93295 NA non-coding upstream 618485 12568484 ~ 12569100 (+)
G93280 NA non-coding upstream 737139 12448374 ~ 12450446 (+)
LOC122357146 NA non-coding downstream 24863 13216658 ~ 13216757 (+)
G93512 NA non-coding downstream 155066 13346861 ~ 13348038 (+)
G93643 NA non-coding downstream 569257 13761052 ~ 13930287 (+)
G93649 NA non-coding downstream 670256 13862051 ~ 13862660 (+)
G93659 LOC107654964,LOC107680818,LOC107602919,LOC107705424,LOC107553200,LOC107739876 non-coding downstream 753535 13945330 ~ 13950605 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 29145 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 598587 12586886 ~ 12588998 (+)
G93296 rrbp1 other upstream 612373 12571631 ~ 12575212 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other upstream 652514 12502385 ~ 12535071 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other upstream 750942 12431919 ~ 12436643 (+)
G93613 NA other downstream 547812 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other downstream 557340 13749135 ~ 13760734 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other downstream 993520 14185315 ~ 14188993 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 1162320 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 1914663 15106458 ~ 15226722 (+)

Expression


Co-expression Network