LOC122356823 (LOC107654911,LOC107705409,LOC107600568,LOC107683712)


Basic Information

Item Value
gene id LOC122356823
gene name LOC107654911,LOC107705409,LOC107600568,LOC107683712
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13309952 ~ 13325051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU138371
AACGGAGTTAACGTCTTGGGGAGTAGTGAGGATGAGCTGAAGCTGATGCTTAAGACACACAGTGCTCACATCGTTGTTCTTCGCCAGCTGGCCCAAGAACTTCCACAAGAAGAACCATCTGCCCCCACTTCAGACAAACTTCAGCTCTGAGGGATCACCAGGACATACAAATGCTACAGAAACACCAAGCAATGTAAACCAACTAAAGATTGTCAACATTAACATTTTGGAGGAACTGGAGGAACACACTCAGGCACACCTG
>XM_043255895.1
GAGTAGGAAGTAGAGATGGACATGGCAAACCATGCGGATAACCGACATTCCAGGCGAGAAAACAGTATCGGTGTTGTACAAAGGTTCCTGTGTTGCTCCTGCTTCCAGACGGGCGAGAACGACCGCTTGGAGTACAATCAGGAAAAGCCACAGAATCCCAAGGCTGTTGTGGATGAAGAGAACGTCCATATTGTTGTTGAAGATTTGGGAATAGACAACCCAGGATTTAGCCTTTCTGATGTTGAGCACAAAGGTCTACTTCAACAGATCACCATAGGCCGTTCTGCCAGTTCTGTGTCCATGTGCCAAAGAGCAGTTCTGAAGAAGAAACTCGCACCACTTTCCTCTTTACCGCTTCAGTCTAGAGCGATCCAAAACAGTGAGGACGACTGTACTGTTGACTCTCTTCTGTATGGTTCTGGCAGCAGTAATGCTGGAGATGGTTGTCTTCTCACTCCTCCGGTCATTAACCTCATACCTCCAACACCTTCTGATGTAATAGATGATGACCAGTTCTTTGACATAAACTCAGAAGAAGAGAGTCTACAGCAAACATCAGGCAGCGAAGGAGTGGATAGTATTGGCAGTGCTGCTATGGGAGAGCAAGAGAGCGAGGAAGATGTAGACCAAGACTTGGGGTCTGAAGTTAATTGTAAGACAAAAGATGAAGAACACCCACAGGTGAAGTCTCCAGAAAAAGAAACAGCCAAAAAGAAGAGCATAGACAAGTCTACAATCCATTTCCTGCATAGCAACTTTCATGTACCTCTTCTTCCTGAATACCCACGAAAACGAAGCCTTAATACTGGAATCAGTTTGCTGCAGTTCACTGAACATAATCTGGATGACTTGAGCAACAAGGATGCCAGCAGCCATGAGTTGCTAAAGGAAGAGTTGAGGCTCCTACCGCTAAGCAGTAAGATAAGCATGTTAACACACCGAAAGAAACCAGCCACTAGGTCCTGTAGTTTGGGCGATACAGTGACAAGAAGTCATACCTTTCACGCCACATGTCAAGGAAGAGATGAAATCCTTGTAGATGAGGAATCTCCACGTCAAAGGAGGATAACTGTTGCATCATACATTCCTCAGACCATGGACCATACTGGAAAAAGTGCAGTGAAGTGGGATTCTAATGGGTACAGAGCCAAAACGTTAGCAGAGCTGAACACGGAGGAGGTTTGCCAGTGGTTTAGCAATATTGGTCTACAGAAATGCCTGCCCTTCATTAGAGAGGCAGAATTCAGTGGATCTCACATTGCTTCTATTGATCTCAACACCCTTGAAATCCTTCAAGTGTCTGAtctggaggagaaagagaggctGCTGTCTGCCATTTACCTTGAGTTACACCCACCAAACTCCACCACCCAAAGACTCGACTCCCTCCTTGAAAGGTTTGGTCCACATAATGTTGAGAAATTCACAGCAGCTTTGGTGTCCATGACCAAGTCAAAATCTTCTCCTCAAGTTAGCAGCATCAACATAAACCGTTGCTCATTCAGATTCAGACAGAAAGAGCAAAATGGTAAATTTCAGAACAACTCACATCTCATTGAAATCACAGTGAATGTGTCAGATCGAACAGTCCATTTAAGGACACCCAAAGAGACAAGTGTGGGAAAAGTGGTGGAGTCCTGTTTGAGGATGCTGGGAATTAATGAAGACAAAGATCACTTCAATCTAAAAAGCAGTGAAGATGAGTTCTCCCCTGAGCAGCAGATTGGAGACTTGCCTGGCTCAGAGACGAGACTAATGGAGCTTTACTTATATAGGAAGGAAACAGCGGAAGTGGGTCCTCATTCATCTGATAACAACATTATTTGTACCACTGACAATATTCAGAGTAAAAATCTGCTAAACAGCACTGGGAAGATTCAGGAGCTAAATCAACAGGTGGCCTCCCTCCAAAATGTTATCATACAGGTTCAGGAGCTTTACCATGGTCTGGTAGCCTTCTGTTCAGAGCTGAAGAAGATGGAGGGGAGATGGATGCAGTGCAAACAGACAGCTTTGAAGCCATCGGAGGTCCGGCTTCTGGAGAAGATGAGGCTAAACTGCCAGGTGTTTAAAGACGAGATCACACTAGTCCACCTCAATCGACAAGTGACCCACCTACGTGAAGTTCTGGAGAAGATGCAGGCCAAGGAGAAAGCAGAGAGGAAGAGCCCTACTCTGACTCAGCTGGTCTCTTTGCAGTCTCCTGTCATGCTGGTGGCCACCCAAGTGAAAGCAGACCCAGATGGTCATTACGGTTTCTCTGCACACTGGGTAGAGGGCCAGGGTCTGATTGTGGTACACAGTGAGGGTGCTAATCTCTGCATGAATGACAGGCTTGTGGAGGTAAACGGAGTTAACGTCTTGGGGAGTAGTGAGGATGAGCTGAAGCTGATGCTTAAGACACACAGTGCTCACATCGTTGTTCTTCGCCAGCTGGCCCAAGAACTTCCACAAGAAGAACCATCTGCCCCCACTTCAGACAAACTTCAGCTCTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107654911

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138371 False 262 lncRNA 0.47 1 13309952 13310213
XM_043255895.1 True 2496 mRNA 0.46 16 13310064 13325051

Neighbor

gene id symbol gene type direction distance location
btbd3b btbd3b,LOC107654989,LOC107705408,LOC107585513,LOC107739865,LOC107679136,LOC107600567 coding downstream 25330 13275699 ~ 13284622 (-)
sptlc3 sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357 coding downstream 105720 13181337 ~ 13204232 (-)
ism1 ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810 coding downstream 130499 13166439 ~ 13179453 (-)
kif16bb kif16bb,LOC107654912,LOC107600573 coding downstream 180240 13097691 ~ 13129712 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562,LOC107585510,LOC107724457,LOC107662813 coding downstream 607794 12691394 ~ 12702158 (-)
LOC122356824 LOC107705409,LOC107600568,LOC107654911,LOC107683712 coding upstream 65521 13390572 ~ 13405543 (-)
memo1 memo1,LOC107654980,LOC107705412 coding upstream 245739 13570790 ~ 13580096 (-)
erlec1 erlec1,LOC107654972,LOC107679899 coding upstream 354236 13679287 ~ 13684104 (-)
LOC122356826 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 coding upstream 402691 13727742 ~ 13735822 (-)
LOC122356402 mycla,LOC107680680,LOC107739875,LOC107553198,LOC107576479,LOC107654967 coding upstream 414598 13739649 ~ 13743024 (-)
LOC122356420 NA non-coding downstream 36811 13271278 ~ 13273141 (-)
LOC122356418 NA non-coding downstream 85416 13208410 ~ 13224536 (-)
G93472 NA non-coding downstream 147225 13162489 ~ 13162727 (-)
G93471 NA non-coding downstream 147582 13162145 ~ 13162370 (-)
G93470 NA non-coding downstream 151515 13156930 ~ 13158437 (-)
G93513 NA non-coding upstream 22350 13347401 ~ 13347885 (-)
G93562 NA non-coding upstream 254476 13579527 ~ 13675111 (-)
LOC122356419 NA non-coding upstream 297715 13622766 ~ 13650733 (-)
G93583 NA non-coding upstream 329328 13654379 ~ 13655349 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding upstream 336699 13661750 ~ 13663911 (-)
LOC122356414 NA other downstream 712650 12557077 ~ 12597302 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other downstream 879174 12429197 ~ 12430778 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 1016358 12278454 ~ 12293594 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other downstream 1510920 11771428 ~ 11799032 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other downstream 1661917 11643930 ~ 11648035 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other upstream 195362 13520413 ~ 13558834 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other upstream 239371 13564422 ~ 13568025 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other upstream 367975 13693026 ~ 13718314 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 573207 13898258 ~ 13904702 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other upstream 585288 13910339 ~ 13911837 (-)

Expression


Co-expression Network