LOC122356417 (mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898)


Basic Information

Item Value
gene id LOC122356417
gene name mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13749135 ~ 13760734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU138576
ATTTCATCTGCTCTTCTGATTTCTGTCCCATTAGCTTTGCGGGTTATGTAACGAGGGGTTGTGTTCAGCCTGATTCTGTGCATCTGACGTTGAAGATTCTGGTGTCTGCTGCTCCTGTTTCACTTATAGCACTGGGGCTTCTTATCTTTAAAACCTATCCCATTAATGAAGAACGCAGGCAGTACAACAACAAACAGCTGCAGCTGCTACTGCGGAACGAAGAACAAGAGTCGGAGATGGAGGCCTTGAAGCCTGACCTCACAGCCTGAAGCATCAGCTCTGACCTACAGAGGGCGCCAAAATACACCTTTACCACTGCAATGAGGAAATCAGCTGGACTTTCCTCACTCAGTTGGTTAACCGGACCAATGAAGGATGACGAACCTTAAAGAAAATCTGCACTACTGTTATCAAAGCTACATATGTATACAACAAACTAACTACAATATCCTGCTTGCTGCTTTCAGTTACAATTACATCTCTCCCTGAGAGAGAACAAAGGGAGATTTTTATGATTAATATGAGGTTCAAATCTACCATCTACCAATATATCGTATTTTGTTGCATCTCTTTGTTCATTTGAGATGATGGATTCATATATTTTGGTTTCTGAATGTTGAGGATGTGTTGAGGTGCATTTGTTTGAGGACATGTTTTCTCATTGTGGTGAAGAATTGTTGGCTTGTTTTTGCACTTGGGGTGAAAATATTTGAAGGGACAGGATTTTTTTCCCCGTTTCTTTAAAGGTGACGTGAAATCATTGTTCTTGTGTGGGCTGTTTATCAGCGTGAACAAAAGGACACTTAtttgtctgcatttttttttaaatggttctgtatttatttatagtgcCTTATGTTGAGCAAGAAAGTTGAAGAGATTTTCTAAAACCTGATCAAATTATAGTAATTAACACAAGTAAATTTAAGTCTGTGCTGGCTGTGCCAAAGACTCAGTGACAGGCTAAAGGAACATTTAGGTGAAAATTTGTAATGTTCattgttgcagtatttttttttttttgtccagcaTGTAATGTTGGTATCTGTacatttatctgtgtgtgtatgtgt
>XM_043255096.1
CGgcgggggggaaaaaaagcgcGTGGGCGTGGACACGAACACTTCAGCGTTCAAACGAGGTAGGAGTGGAGATCAGCATCTCGTTTTCTTCCTGAGAGCAGCACTTTGTCAAGCGGTGTTGCTTAACTTGAACACAAGAATAAAGCAGCTCAATCCGCTCCTGAAATAAAACACCCCTGATTAGTGTTATGGCAAGAGGAGAGGGAGCCGAACAGTTCTCATCCGGTTTGTTACATACAGCCAAAACTGCGAATCAAGATGGAATCAAAATTGTTAAGCTTCCCCCACAGCAGGAGAGGAAAAGAGCTCTGACTGTGTGGAGCAAGGTGTGTTTTGCAATCGGAGGGGCTCCGTATCAGATCACAGCCACCGCCCTGGGCTTCTTTCTGCAAATGTTTTTGCTTGATGTGGCACTGGTGAGCCCCCTCAATGCTTCTGTGATCCTGTTTGTGGGTCGAGCCTGGGATGCCGTGACTGATCCTACAGTTGGGTTTTTCGTAAGCAGAAGCCCATGGACACGGCACGGACGTATGATGCCCTGGATTCTGTTGTCGACCATACCAGCTGTGTTGTGTTATATCCTAATATGGGTAGTTCCACCTATAGAGCAGGGAAAGATGATGTGGTATCTGCTCTTCTACTGTCTCTTCCAGACTCTCCAGACATGCTTTCATGTGCCTTACTCCTCTCTGACCATGTTTATCAGCAACAAACAGCAGGAACGAGATTCAGCTACAGCGTACCgCATGACTGTAGAGGTGTTGGGTACAGTAATTGGCACTGGCGTTCAGGGGCAGATTGTAGGCATGGCCAACACCCCCTGCATTAACGACACATCAGTGACCAACAGCTACAACAACTCTGTGCATGACAATATTACTCAGGTCTTACTGGATAAAGTATTTAAAGAGAGGCGTGCATATGTGTTTGCATCTGTAGTCATAAGTTTGATCTACATCCTGTGTGCTGTTGTGCTGTTCTTAGGAGTGAGAGAGCAGGACAATCAGGGAGGTTTAAAAGCACAGAAGCGTGTGTCATTTCAGACCGGTTTGAGGCTGGTGATGGGTCATGGGCCATATGTTAAACTGGTGCTGGCTTTCCTATTCACTTCATTGGCCTTCATGCTGCTGGAGGGAAATTTTGCCGTGTTTATCAAGTACACGCTGGGATTCAGAGAGGATTTTCAGAACATCTTACTGGTCATCATGCTGTCTGCGGCTCTTACCATTCCCCTGTGGCAGTGGTTTCTCTGCAGGTTTGGCAAAAAGACTGCTGTGTACATTGGCATACCGtggGCAGTGCCATTCATGATCCTCGTGGTGTGTGTAAAGAGTAGTCTCCTCGTGTCCTATATTGTATCAGTCGCTGCTGGTGCTAGTGTGGCAGCGGCCTTCCTTCTGCCCTGGTCCATGCTTCCAGATGTTGTAGATGATTTTAAAGTCCAGAATCCCACGTCTCAAGGCCATGAAGCTATTTTCTACtctttctatgttttttttactaaattcgCCTCTGGTGTGTCAGCTTGCGTATCAACACTAGCATTAAGCTTTGCGGGTTATGTAACGAGGGGTTGTGTTCAGCCTGATTCTGTGCATCTGACGTTGAAGATTCTGGTGTCTGCTGCTCCTGTTTCACTTATAGCACTGGGGCTTCTTATCTTTAAAACCTATCCCATTAATGAAGAACGCAGGCAGTACAACAACAAACAGCTGCAGCTGCTACTGCGGAACGAAGAACAAGAGTCGGAGATGGAGGCCTTGAAGCCTGACCTCACAGCCTGAAGCATCAGCTCTGACCTACAGAGGGCGCCAAAATACACCTTTACCACTGCAATGAGGAAATCAGCTGGACTTTCCTCACTCAGTTGGTTAACCGGACCAATGAAGGATGACGAACCTTAAAGAAAATCTGCACTACTGTTATCAAAGCTACATATGTATACAACAAACTAACTACAATATCCTGCTTGCTGCTTTCAGTTACAATTACATCTCTCCCTGAGAGAGAACAAAGGGAGATTTTTATGATTAATATGAGGTTCAAATCTACCATCTACCAATATATCGTATTTTGTTGCATCTCTTTGTTCATTTGAGATGATGGATTCATATATTTTGGTTTCTGAATGTTGAGGATGTGTTGAGGTGCATTTGTTTGAGGACATGTTTTCTCATTGTGGTGAAGAATTGTTGGCTTGTTTTTGCACTTGGGGTGAAAATATTTGAAGGGACAGGATTTTTTTCCCCGTTTCTTTAAAGGTGACGTGAAATCAT

Function

symbol description
mfsd2aa Predicted to enable lysophospholipid:sodium symporter activity. Acts upstream of or within lysophospholipid transport and maintenance of blood-brain barrier. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in axis; chondrocranium; nervous system; and polster. Used to study microcephaly. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 15. Orthologous to human MFSD2A (major facilitator superfamily domain containing 2A).

NR:

description
PREDICTED: sodium-dependent lysophosphatidylcholine symporter 1-A

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family

RNA

RNA id representative length rna type GC content exon number start site end site
TU138576 False 1073 lncRNA 0.39 2 13759556 13760734
XM_043255096.1 True 2276 mRNA 0.46 15 13749135 13760422

Neighbor

gene id symbol gene type direction distance location
kcnk1b kcnk1b,kcnk1,LOC107705375,LOC107654970,LOC107680317,LOC107739872,LOC107553189,LOC108415485 coding upstream 22111 13721418 ~ 13727024 (+)
agpat4 agpat4,LOC107739871,LOC107553196,LOC107089284 coding upstream 56786 13686039 ~ 13692349 (+)
gpr75 gpr75,LOC107602942,LOC107654975,LOC107683917,LOC107705414,LOC107553188,LOC107739897 coding upstream 70503 13675767 ~ 13678632 (+)
psme4a psme4a,LOC107602941,LOC107654976,LOC107679520,LOC107739869 coding upstream 74087 13650908 ~ 13675048 (+)
thbs2a thbs2a,thbs2,LOC107705413,LOC107654977,LOC107739867 coding upstream 103554 13626598 ~ 13645581 (+)
LOC122356827 LOC107736840,LOC107664175,LOC107568695,LOC107747274 coding downstream 38177 13798911 ~ 13801239 (+)
LOC122356401 agpat4,LOC107739871,LOC107553196 coding downstream 91853 13852587 ~ 13858805 (+)
mfsd2aa mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 coding downstream 157464 13918198 ~ 13929237 (+)
si:ch211-67f13.7 LOC107602918 coding downstream 169889 13930623 ~ 13936869 (+)
LOC122356869 ttc9,LOC107602957,LOC107553202,LOC107654962,LOC107739879 coding downstream 251515 14012249 ~ 14015870 (+)
G93512 NA non-coding upstream 401097 13346861 ~ 13348038 (+)
LOC122357146 NA non-coding upstream 532378 13216658 ~ 13216757 (+)
G93485 sptlc3,LOC107705357,LOC107662809,LOC107654988,LOC107600566 non-coding upstream 557340 13187585 ~ 13191795 (+)
G93474 NA non-coding upstream 584822 13164037 ~ 13164313 (+)
G93306 NA non-coding upstream 1146594 12602191 ~ 12602541 (+)
G93643 NA non-coding downstream 318 13761052 ~ 13930287 (+)
G93649 NA non-coding downstream 101317 13862051 ~ 13862660 (+)
G93659 LOC107654964,LOC107680818,LOC107602919,LOC107705424,LOC107553200,LOC107739876 non-coding downstream 184596 13945330 ~ 13950605 (+)
G93592 NA non-coding downstream 270648 14031382 ~ 14161320 (+)
G93685 LOC107553176,LOC107654957,LOC107705429,LOC107602958 non-coding downstream 329791 14090525 ~ 14091232 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 590695 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 1160137 12586886 ~ 12588998 (+)
G93296 rrbp1 other upstream 1173923 12571631 ~ 12575212 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other upstream 1214064 12502385 ~ 12535071 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other upstream 1312492 12431919 ~ 12436643 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other downstream 424581 14185315 ~ 14188993 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 593381 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 1345724 15106458 ~ 15226722 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other downstream 1494340 15255074 ~ 15275234 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other downstream 1535115 15295849 ~ 15314656 (+)

Expression


Co-expression Network