G93745 (sav1,LOC107705447,LOC107654943,LOC107736858,LOC107602931,LOC107682971,LOC107553191)


Basic Information

Item Value
gene id G93745
gene name sav1,LOC107705447,LOC107654943,LOC107736858,LOC107602931,LOC107682971,LOC107553191
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14282769 ~ 14284777 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU138738
GGGGGTGGGCGACTGTGCGGCTGGGGCGTCTGAGGCTGTCCTGGGTTTTGTGGGTAGCCAAGTTCATTGTGCTCGTAGTACCTGTAGTTCTCATTAAAGTGGTCTGGTCTGCGCGCTCGCCTGGGTTGGTTATTGTAGTAGGGCTCTGGAGGGTAGTAAAACGGGCCGCCGTCTCCGTTCTCTGTTACTGAACCAGCGTCGCTCATGTAAGAGGGTGAGGAAGGAGAGTAGTCACGATGAAGGTGAGGTGGCGCCGACAGCCGGTGACTCTCCCTGCGCGACACCTCGAGGGGGGTCCGTGGAGGGGCGTTGCGCAGGAAACTTTTGGGGACGCTAACATCCCCAACGGATCCGGAGGAATATGGACCTGCACCAGACACCCCGGCTGGAGCTGGCTCCACTAACGGCGGCTCGCGGCGAAGAAATGTTGGATGCCGGATAAACGATGGCATCAAATCTGGAACAAAAACCATGAGAGAGGCAGAAGAGGGGACGACGGACTGAAGATACTCACTTCTCAGCAGCGGGGACGTTTCTTTCTTCACATATTTGCCCTGAACTTCTGCTGGCTTGGACGCTTCGTTTTTACTCTTCTTTCTAGAGAGCATCGTTAATCCGACACGATTCCGGACCGGTTAGACGTCGGCTTCATCCTGAAATCCGGATCTAGATTCGCACTGACACTAAAAACCGAGTCCATTTCGCAGCGTTTAGCCCGATAGCTACTTTGGAGTCATCATGGCTACAGATTGAAACCATAAACACACAGGCGATTAGTTTGCGTTCAGCGAACGGGTCGATTGTTTGAGTGTCTAGTCGAACATTACGAACGGTTTTCGATGATTAATTAGCGCTCCCCGTGCGCACCGTTCAAATTACTCCCCGAGAAAAGCGCAAGAAAACTTTTACCAGCTGAATATGTCCAACCCAACCCAGCCCT

Function

symbol description
sav1 Predicted to enable molecular adaptor activity. Acts upstream of or within cilium assembly. Orthologous to human SAV1 (salvador family WW domain containing protein 1).

NR:

description
PREDICTED: protein salvador homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138738 True 940 lncRNA 0.53 2 14282769 14284777

Neighbor

gene id symbol gene type direction distance location
atl1 atl1,LOC107705445,LOC107602974,LOC107736665,LOC107682422,LOC107553217 coding upstream 6330 14268377 ~ 14276439 (+)
dmac2l atp5s,LOC107705443,LOC107602971,LOC107654946,LOC107736634,LOC107553216 coding upstream 46736 14232374 ~ 14236033 (+)
LOC122356518 LOC107705440,LOC107654948,LOC107736540,LOC107682154,LOC100538248 coding upstream 73384 14200850 ~ 14209385 (+)
cnih1 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding upstream 86517 14191182 ~ 14196252 (+)
LOC122356869 ttc9,LOC107602957,LOC107553202,LOC107654962,LOC107739879 coding upstream 266899 14012249 ~ 14015870 (+)
tmx1 tmx1,LOC107654918,LOC107602932,LOC107736746,LOC107683560,LOC107705366 coding downstream 55114 14339891 ~ 14344861 (+)
esr2b LOC107736782,LOC107683586 coding downstream 92817 14377594 ~ 14393187 (+)
gphb5 gphb5,LOC104954562 coding downstream 200289 14485066 ~ 14487500 (+)
phf3 LOC107665590,LOC107726593,LOC107602981,LOC107736851,LOC107683665,LOC107553234 coding downstream 335388 14620165 ~ 14630849 (+)
zgc:171579 zgc:171579,LOC107665586,LOC107568696,LOC107736860,LOC107747305,LOC107579559,LOC107664312 coding downstream 555005 14839782 ~ 14842432 (+)
G93743 NA non-coding upstream 5894 14276615 ~ 14276875 (+)
G93736 NA non-coding upstream 33247 14248765 ~ 14249522 (+)
G93733 NA non-coding upstream 37227 14243408 ~ 14245542 (+)
G93723 NA non-coding upstream 55058 14224983 ~ 14227711 (+)
G93592 NA non-coding upstream 121449 14031382 ~ 14161320 (+)
G93755 NA non-coding downstream 22219 14306996 ~ 14308382 (+)
G93766 LOC107705365,LOC107736713,LOC107553220,LOC107683494,LOC107602921 non-coding downstream 34003 14318780 ~ 14322084 (+)
G93818 NA non-coding downstream 247245 14532022 ~ 14532317 (+)
G93834 sgpp1,LOC107602978,LOC107726595,LOC107553224,LOC107683631 non-coding downstream 278614 14563391 ~ 14567101 (+)
G93835 NA non-coding downstream 283548 14568325 ~ 14568913 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other upstream 93776 14185315 ~ 14188993 (+)
G93613 NA other upstream 373166 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other upstream 522035 13749135 ~ 13760734 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 1124329 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 1693771 12586886 ~ 12588998 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 69338 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 821681 15106458 ~ 15226722 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other downstream 970297 15255074 ~ 15275234 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other downstream 1011072 15295849 ~ 15314656 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other downstream 1030037 15314814 ~ 15318177 (+)

Expression


Co-expression Network