nkx1.2la (nkx1-2,nkx1.2la,LOC107601042,LOC107702751,LOC107665606,LOC107586110,LOC107719237)


Basic Information

Item Value
gene id nkx1.2la
gene name nkx1-2,nkx1.2la,LOC107601042,LOC107702751,LOC107665606,LOC107586110,LOC107719237
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15901540 ~ 15904909 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU139426
ATTGATTGAAATGAGCGCAGGTTTAAGTACCGAGTGCTCTCAGCCAATCGAAAGGGGATCCCGTTAAACGCTCGCGTTCGCGCGTCTCCTCTAATGGACCTGTTAAAGAGCTCGAGCGCACCTTCGTCCGCTGACATCTGACCGAAGCGCCTCGGATCCGACCGCGAGCCGTGTCCACTTTCTGCGCCTCCTCTGTAAGAGAACACCG
>TU139427
CAGACGCCGACTTGGACTCCTCAACCCCGCTCAGAAACGTAAGACCTGGCTTTTCTCCTCGCGAAGAAGCAGATGAGACGGGGGAAGAGAGGATGACCCCAGCGCCGGACGATCTGTCGCGTCAGCGGCGGCGGCGCGCGGACCACAGCTGCGCGAAGCCGCGGCGCGCCAGAACCGCGTTCACGTACGAACAGCTGGTGGCTCTGGAGAACAAGTTCCGCGCCACGCGTTATTTGTCCGTGTGCGAACGGCTGAACCTCGCGCTCTCGCTGAGCCTGACCGAAACCCAAGTCAAGATTTGGTTCCAGAACCGAAGGACCAAGTGGAAAAAGCAGAACCCCGGCGCAGAGAGTTCCCTGCAACCCGGCACGAACATCAGCCCGACCTGTGGGTCCGCATCCGCC
>XM_043254802.1
ggtAATAAAGATGTTATTTATATCGTTTGAGACACAGCCACAATGCAAACTGtgatatgcacacacatatagctCATTGAAAAACTCTTTACAGTGTAAAAATGATCTTTGCTGAAACAAACGAACACCGAAGAGTGTGTGCTAAGGATCAGACGCAACAGTTTCTTGAGTTATGCCACTTGTCAGCCTGGAAACTCGTCCGTATTTGTATTGATTGAAATGAGCGCAGGTTTAAGTACCGAGTGCTCTCAGCCAATCGAAAGGGGATCCCGTTAAACGCTCGCGTTCGCGCGTCTCCTCTAATGGACCTGTTAAAGAGCTCGAGCGCACCTTCGTCCGCTGACATCTGACCGAAGCGCCTCGGATCCGACCGCGAGCCGTGTCCACTTTCTGCGCCTCCTCTGTAAGAGAACACCGAAATAAGATAGAAATACTCCTGAAATTTGGAAAATGCTCGAATGTCAGGAGTCCGGAGCGAAAAGCACACCGGGTCATCGGATTTCCTTTTCGATTATTGACATACTGGATCCTAAAAAGTTCACGAGTAAGAAAAGACACGCCGTGTCGGAGAAAGAACGGACGTCTTCTTCAGAAATCACAGAATTTGGAAGTTTGGAGGAACGGCGTAACGGGAAAGAAAGTCCGGGGCACGAAGGAACGCTTTCCATCTGCAAAAATAAAGGTGTTCGCTTAACTGATGTCCATCAAAGCTGCGTCAGACTCCATCCTCCCGATCCAGACGCCGACTTGGACTCCTCAACCCCGCTCAGAAACGTAAGACCTGGCTTTTCTCCTCGCGAAGAAGCAGATGAGACGGGGGAAGAGAGGATGACCCCAGCGCCGGACGATCTGTCGCGTCAGCGGCGGCGGCGCGCGGACCACAGCTGCGCGAAGCCGCGGCGCGCCAGAACCGCGTTCACGTACGAACAGCTGGTGGCTCTGGAGAACAAGTTCCGCGCCACGCGTTATTTGTCCGTGTGCGAACGGCTGAACCTCGCGCTCTCGCTGAGCCTGACCGAAACCCAAGTCAAGATTTGGTTCCAGAACCGAAGGACCAAGTGGAAAAAGCAGAACCCCGGCGCAGAGAGTTCCCTGCAACCCGGCACGAACATCAGCCCGACCTGTGGGTCCGCATCCGCCCTCCACCCTCCATACAGCGCCGGGAACGTCATATTTCATTCCGCCCCGGTGCACCTGGCGTCTCCCGGGGGGCTTTTGCATCCGTTTTTACCCGATGGCTTTCTCCAGCCAGCATTCTTCCCCCCGCACTTATGAAGTCAGGAAGGAGGAAAGATCACGGACTACCtgtatatatgaatttataaagCGGATTGCTTTTTCAGTGATCATCCACAGCGTGGGCTTGATTAGGCCAAATTAACTTACATGTAGCCTGACTGTTTTCACTGAAAGCTGTGAGCAGAAATATAGCTAAGACTGATCCAACCCTGGGCGTCAAAAATGATAAATCTGCACACACTATTGTAATAATAGGTGATCTGAGATTGTAATCACGGCCCAACTTGGCAACCGCCGCAACTCTTAAAGCTGAGATGTATATATGTATCTTTCTTTTGTAATATATCGGTCCTGTCAGCAATTTGATACATCACTGTGGATTAATAACATAGAATTGCTTAAATAACCTAAAATGAAAGACactggaaatatttaaaaagctgtcCTCAATAAAATCAGAC

Function

symbol description
nkx1.2la Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axis; nervous system; neural tube; periderm; and tail bud. Orthologous to human NKX1-2 (NK1 homeobox 2).
nkx1-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: NK1 transcription factor-related protein 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09309 NKX1; homeobox protein Nkx-1

RNA

RNA id representative length rna type GC content exon number start site end site
TU139426 False 208 lncRNA 0.56 1 15901749 15901956
TU139427 False 404 TUCP 0.63 1 15903946 15904349
XM_043254802.1 True 1700 mRNA 0.49 2 15901540 15904909

Neighbor

gene id symbol gene type direction distance location
ankrd2 LOC107586109,LOC107747258 coding upstream 13438 15877514 ~ 15888102 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding upstream 40078 15797433 ~ 15861462 (+)
got1 got1,LOC107665595,LOC107601049,LOC107586067,LOC107702745 coding upstream 127995 15764954 ~ 15773545 (+)
slc25a28 slc25a28,LOC107601050,LOC107747263,LOC107719215,LOC107665596 coding upstream 177797 15714193 ~ 15723743 (+)
golga7bb golga7bb,LOC107728443,LOC107702732,LOC107665585,LOC103368019,LOC108247940 coding upstream 293659 15581868 ~ 15607881 (+)
prkg1a prkg1a,prkg1b,LOC107747254,LOC107665604,LOC107702750,LOC108263833,LOC108443637,LOC107586071,LOC103355670 coding downstream 11923 15916832 ~ 15966825 (+)
dkk1a LOC107601033,LOC107665569,LOC107747256,LOC107719231,LOC107702737,LOC107586111 coding downstream 63846 15968755 ~ 15971312 (+)
polr1b polr1b coding downstream 387852 16292761 ~ 16302095 (+)
LOC122356348 LOC107747251,LOC107549156,LOC107665613,LOC107676394,LOC107719205,LOC107586077 coding downstream 422948 16327857 ~ 16332665 (+)
cdc42ep3 cdc42ep3,LOC107549143,LOC107665567,LOC107676396,LOC107747292,LOC107719229,LOC107586113 coding downstream 476449 16381358 ~ 16390115 (+)
G94176 NA non-coding upstream 113310 15774767 ~ 15788230 (+)
G94175 NA non-coding upstream 127145 15773969 ~ 15774395 (+)
G94174 NA non-coding upstream 136966 15764340 ~ 15764574 (+)
G94173 NA non-coding upstream 139573 15761692 ~ 15761967 (+)
G94163 NA non-coding upstream 191386 15707116 ~ 15710154 (+)
LOC122356350 NA non-coding downstream 456763 16361672 ~ 16381076 (+)
G94361 NA non-coding downstream 636276 16541185 ~ 16542938 (+)
G94365 NA non-coding downstream 652927 16557836 ~ 16558137 (+)
G94397 NA non-coding downstream 836558 16741467 ~ 16796842 (+)
G94481 NA non-coding downstream 981175 16886084 ~ 16925137 (+)
G94186 st3gal7,LOC107665608,LOC107601047,LOC107747259 other upstream 24118 15873444 ~ 15877422 (+)
hps1 hps1,LOC107747297,LOC107665607,LOC107719211,LOC107702747,LOC107586068 other upstream 29724 15864839 ~ 15871816 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other upstream 583363 15314814 ~ 15318177 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other upstream 586884 15295849 ~ 15314656 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other upstream 626306 15255074 ~ 15275234 (+)
G94324 NA other downstream 610918 16515827 ~ 16518826 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other downstream 692872 16597781 ~ 16605383 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other downstream 1655387 17560296 ~ 17575938 (+)
G94760 NA other downstream 2534264 18439173 ~ 18439583 (+)
G94789 LOC107563058 other downstream 2631983 18536892 ~ 18537443 (+)

Expression


Co-expression Network