cisd1 (cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718)


Basic Information

Item Value
gene id cisd1
gene name cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16290154 ~ 16292379 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU139489
GTAAATACCGCGCACAGTTAATCAGCTTGATCTGTCTATTTGGCCTTGAGGACGATTGAAGATCTTTGAATTATGAGcaaaaacaatcataataatACAAGACAATAGTAATTAACCATGAGCGCAACCAACTCCTTCCACAAAGCTGAGATCATCACTGCGGTGTCTGTGACAGTCGGGGCCGCGGCCGTGGGAATCCTCatctacaaaacatttttcagcaAAAGCAAATGCGTGAAGCCAAAGGTCAACCTTGATCTGCAGAAAGACAACCCCAAAGTGGTACATGCGTTTGACATCGAGGACCTGGGCGACAAAGCCGTGTACTGTAGGTGCTGGAGATCCAAAAAGTTTCCATACTGTGATGGCGCACATGCTAAACACAATCAGGAAACGGGAGACAATGTTGGTCCCCTGATCATTAAACGCAAGGAGGCATGAGCATCGTCACCGTTCATGACCGTCCGTTCTCAGCAATTAGTGTGTCTCCGCTTTACGTGTGTGATCAGGGCTGATGGGattaaaagtgtgatttatgttatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgatcATGTACTGTACGATTGACCGGTTTCAGTGATCTGCCCTCACACCGGTACTATATATCTGGGTGGTTGTTAAGCAATACATAtcaattttctcttttttttttttttctacttagGCTTTTGTGGATcttctaaatacatttctatgcTTAAACACTGGTCGTATTGTTGCAGATACActaaaaaaacatagaaatagaaaaaacacaTGAGTTTAAACTGAATCGTGTCTGTTTTAGTTGATAAATATGATTGTGAAAGGAGTATGAAAACCAAAtcttctcatgttttttttttcccctatgtGTTGCCTATTAAACTTCACACATGACCTTAACTGATCActgacattaaatgtattttaattggcATTCTTCTGTAATATCTTTTGAATCCTAGTCACAGAATCTGACAGGTACTGTTTTATGTCGAATAAATTGCCTCTTGTCGTTCAGAAAGATGTACTTGTGAAAATGCTAGatctgtttcttaaaaaaaaaaaaaaatacacgttATATGGAGAAAATcatgttttgatgagcttgtcttttctgtgaaattattatattttctctaTCAGAGATGTACACTATACAAGTGTGatgttaaataaactatttcAAACAGCTTGTGTGAG
>XM_043254577.1
ACTCGCGTTCTGCGTAAATACCGCGCACAGTTAATCAGCTTGATCTGTCTATTTGGCCTTGAGGACGATTGAAGATCTTTGAATTATGAGcaaaaacaatcataataatACAAGACAATAGTAATTAACCATGAGCGCAACCAACTCCTTCCACAAAGCTGAGATCATCACTGCGGTGTCTGTGACAGTCGGGGCCGCGGCCGTGGGAATCCTCatctacaaaacatttttcagcaAAAGCAAATGCGTGAAGCCAAAGGTCAACCTTGATCTGCAGAAAGACAACCCCAAAGTGGTACATGCGTTTGACATCGAGGACCTGGGCGACAAAGCCGTGTACTGTAGGTGCTGGAGATCCAAAAAGTTTCCATACTGTGATGGCGCACATGCTAAACACAATCAGGAAACGGGAGACAATGTTGGTCCCCTGATCATTAAACGCAAGGAGGCATGAGCATCGTCACCGTTCATGACCGTCCGTTCTCAGCAATTAGTGTGTCTCCGCTTTACGTGTGTGATCAGGGCTGATGGGattaaaagtgtgatttatgttatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgatcATGTACTGTACGATTGACCGGTTTCAGTGATCTGCCCTCACACCGGTACTATATATCTGGGTGGTTGTTAAGCAATACATAtcaattttctcttttttttttttttctacttagGCTTTTGTGGATcttctaaatacatttctatgcTTAAACACTGGTCGTATTGTTGCAGATACActaaaaaaacatagaaatagaaaaaacacaTGAGTTTAAACTGAATCGTGTCTGTTTTAGTTGATAAATATGATTGTGAAAGGAGTATGAAAACCAAAtcttctcatgttttttttttcccctatgtGTTGCCTATTAAACTTCACACATGACCTTAACTGATCActgacattaaatgtattttaattggcATTCTTCTGTAATATCTTTTGAATCCTAGTCACAGAATCTGACAGGTACTGTTTTATGTCGAATAAATTGCCTCTTGTCGTTCAGAAAGATGTACTTGTGAAAATGCTAGatctgtttcttaaaaaaaaaaaaaaatacacgttATATGGAGAAAATcatgttttgatgagcttgtcttttctgtgaaattattatattttctctaTCAGAGATGTACACTATACAAGTGTGatgttaaataaactatttcAAACA

Function

symbol description
cisd1 Predicted to enable 2 iron, 2 sulfur cluster binding activity. Predicted to be located in intracellular membrane-bounded organelle and membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Orthologous to human CISD1 (CDGSH iron sulfur domain 1).

NR:

description
CDGSH iron-sulfur domain-containing protein 1-like

GO:

id name namespace
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K23885 CISD1; CDGSH iron-sulfur domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU139489 False 1216 TUCP 0.38 3 16290154 16292366
XM_043254577.1 True 1218 mRNA 0.38 3 16290165 16292379

Neighbor

gene id symbol gene type direction distance location
ipmka LOC107747295,LOC107665575,LOC107719230,LOC107586076,LOC107549139 coding downstream 437 16279665 ~ 16289717 (-)
morn4 morn4,LOC107719210,LOC107702749,LOC107747296 coding downstream 396477 15889973 ~ 15893677 (-)
st3gal7 st3gal7,LOC107665608,LOC107601047,LOC107747259 coding downstream 413317 15872075 ~ 15876837 (-)
nkx3.3 nkx3.3,LOC107747300,LOC107665572,LOC107586090,LOC107579953 coding downstream 541694 15743917 ~ 15748460 (-)
pyroxd2 pyroxd2,LOC107747264,LOC107601051,LOC107665597,LOC107586065,LOC107702741,LOC107719216 coding downstream 580006 15701427 ~ 15710148 (-)
LOC122356736 nanp,LOC107586073,LOC107736515,LOC107665564,LOC107549144,LOC107676393,LOC107719206 coding upstream 9830 16302209 ~ 16304328 (-)
LOC122356349 rmdn2,LOC101884968,LOC107719222,LOC107549137,LOC107665553,LOC107747279,LOC107676373 coding upstream 42645 16335024 ~ 16361805 (-)
LOC122356747 kmo,LOC107665616,LOC107549141,LOC101885014,LOC106576798 coding upstream 140316 16432695 ~ 16445739 (-)
trnah-gug_23 NA coding upstream 155312 16447691 ~ 16447762 (-)
march5 march5,LOC107719203,LOC107549154,LOC107747250,LOC107665589 coding upstream 177556 16469935 ~ 16487675 (-)
G94247 NA non-coding downstream 322811 15967014 ~ 15967343 (-)
G94232 NA non-coding downstream 382663 15907270 ~ 15907491 (-)
G94200 NA non-coding downstream 526409 15763424 ~ 15763745 (-)
G94199 NA non-coding downstream 527311 15762551 ~ 15762843 (-)
G94145 NA non-coding downstream 649521 15640275 ~ 15640633 (-)
G94298 LOC107549156,LOC107665613,LOC107747251,LOC107676394,LOC107719205 non-coding upstream 37763 16330142 ~ 16332347 (-)
G94308 NA non-coding upstream 84194 16376573 ~ 16376923 (-)
G94411 opn3,LOC107549142,LOC107665579,LOC107747290,LOC107719228,LOC107586115 non-coding upstream 130287 16422666 ~ 16423793 (-)
G94414 opn3,LOC107665579,LOC107549142,LOC107747290,LOC107719228 non-coding upstream 137462 16429841 ~ 16430293 (-)
G94416 opn3,LOC107665579,LOC107747290,LOC107549142,LOC107549136,LOC107586115 non-coding upstream 138295 16430674 ~ 16432430 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 120950 16009687 ~ 16169204 (-)
G94216 NA other downstream 404932 15877527 ~ 15885222 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other downstream 496614 15774777 ~ 15793540 (-)
nkx2.3 nkx2.3,LOC107747299,LOC107665571,LOC107702735,LOC107601037,LOC107586108,LOC107719236 other downstream 535026 15752636 ~ 15755128 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other downstream 569338 15686270 ~ 15720816 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other upstream 133318 16425697 ~ 16426535 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other upstream 1082371 17374750 ~ 17387006 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 2253192 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 2665324 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 2993651 19286030 ~ 19362041 (-)

Expression


Co-expression Network