G94416 (opn3,LOC107665579,LOC107747290,LOC107549142,LOC107549136,LOC107586115)


Basic Information

Item Value
gene id G94416
gene name opn3,LOC107665579,LOC107747290,LOC107549142,LOC107549136,LOC107586115
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16430674 ~ 16432430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU139701
TTTAATTCAGGTTTgcttttactttatatatcacATTAATTCTTTATGGGTGATCTGTAAGCACATAGATATAGATTCAAAAcaagttataaaatattttgttctcTTAATGCTTAATCTTCCGCTTCGTGGGTCTGTCTATGTATCTCACTTTTTTAGTGCAAGAAAAACATCGTCATGTATATTCTATGTTTAGGGTGGGAGGAAAAAGGGCCGTTCGCTAGCATGTGAAAACTCACATTAATCCTCGTTCATGTTTAACCCACAAATCCTCTGCAAGGCATAATCCATGAATGAGATGACAGATGCTCTGCGCCCACTCACACAGGCAGCCTGTCATTCAGTTGCCATTTTCGAACATAAGTCagtatgtctttttttaaatccattccaaaaaattgtaaacatttttttaaccctCACTCGATGGTTTGTGAATCTTTATTTGATTCAGATTAGGGTGACCCTAAGAGCTATTTTCCCTGGACACACGCGTGcttgccaggatttctgtaGGGTTTGAGAGCGTTTTGAAAACACAAGGAACCGATGCCATACACCGATCGGTCTGCGCGcaatattttaggcaatatagaaatcctgacCACGAGGAGTCCTGGTAAAATGGCTCTTGGTCACCCTAATTCagattaaatattatagtatCCAAAGTCACACCAATAGTTATGATTTTCAGTAGGGACGCAGACatgttaaacataataaaatgccaattttcaatatcaaacAGCTacaaaaaaccacaaaaaaactgGACACTGATGAGACCGGAAGCTAGTATCATAGAAATTACAAATGGCAGCGTCCATTTTTACgtcaggaaaaaggtggatagaaAAGGGTAAACACGGCTCATCTCAAGATGCAACTCAGTTTGAGGTAAACTCAGCAAAGTTTAATATTTAGGGTTCATTTAAAGCCCTAATCTAAACACCGAGCAGTAGAAATAGTGATGTTTCGCTTGCTTTTGAATAGGACGCGCACTTCGCTTCCTCCAGGGGGCGCTGTGGGCCTGGCTGAATGTGCGCAGAAGGCGCTGCGTGTCCCGTCCTAGAAGAGTCCTTGTACTAACGCTGTGTCGCTAATCTATCCGAGCACACTCACTAATGCAGTCTGCTCACGGACTGAGCAATCTAAGCTGCGGTTATCTCACTATCCCATGAAACCGGCTGACGTTTCAGGGTCTGAAAGGATGGAGAAAGAACACAATTGATCGAAAACAACCCCGAGTCGTTTTTCGTAAAATACTAACAGTAATTACAATTCACACAAATCTTGATTGGGAAGGAACACAAAACAGCTCGCActgcaatacaataaaaaatctttttcccATATTTttcgtatttatttatataaaaaaagatgcttCCGTATCCTCTGCATATTATAAACGTTAAATTAGTGTGACGTTAATGAACTATACTGTCTTTGTGGCGAGTGTTAAAGAGGTCGAACTTGAATTACATTGATGTCTGGTTCGTCATTGAATTTGGAGGTAATATCCAGAGGATGAGTGTCATTGCTAGCGATGATGAATACGATGGAGGAAGAGCTGAAGGTCACTCTCTTTTTGGGCCGGTCGGGACGACTACGTGACATCACAATAGGGCGTACAGGATTTTCGATGCGGGCCAGGGGACGGTCTTTAATGTTGTGCTGGAAAGTGGTCAGACGAGAACAAAGCATCTGTAGCATGCACCTGCGAAACTGATCAAACAAAAAGAGGAAAGATg

Function

symbol description
opn3 Enables retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human OPN3 (opsin 3).

NR:

description
PREDICTED: opsin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139701 True 1757 lncRNA 0.41 1 16430674 16432430

Neighbor

gene id symbol gene type direction distance location
LOC122356349 rmdn2,LOC101884968,LOC107719222,LOC107549137,LOC107665553,LOC107747279,LOC107676373 coding downstream 68869 16335024 ~ 16361805 (-)
LOC122356736 nanp,LOC107586073,LOC107736515,LOC107665564,LOC107549144,LOC107676393,LOC107719206 coding downstream 126346 16302209 ~ 16304328 (-)
ipmka LOC107747295,LOC107665575,LOC107719230,LOC107586076,LOC107549139 coding downstream 140957 16279665 ~ 16289717 (-)
morn4 morn4,LOC107719210,LOC107702749,LOC107747296 coding downstream 536997 15889973 ~ 15893677 (-)
st3gal7 st3gal7,LOC107665608,LOC107601047,LOC107747259 coding downstream 553837 15872075 ~ 15876837 (-)
LOC122356747 kmo,LOC107665616,LOC107549141,LOC101885014,LOC106576798 coding upstream 265 16432695 ~ 16445739 (-)
trnah-gug_23 NA coding upstream 15261 16447691 ~ 16447762 (-)
march5 march5,LOC107719203,LOC107549154,LOC107747250,LOC107665589 coding upstream 37505 16469935 ~ 16487675 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276,LOC106604898 coding upstream 87106 16519536 ~ 16538481 (-)
LOC122356270 LOC107549152,LOC107747275 coding upstream 110651 16543081 ~ 16546492 (-)
G94414 opn3,LOC107665579,LOC107549142,LOC107747290,LOC107719228 non-coding downstream 381 16429841 ~ 16430293 (-)
G94411 opn3,LOC107549142,LOC107665579,LOC107747290,LOC107719228,LOC107586115 non-coding downstream 6881 16422666 ~ 16423793 (-)
G94308 NA non-coding downstream 53751 16376573 ~ 16376923 (-)
G94298 LOC107549156,LOC107665613,LOC107747251,LOC107676394,LOC107719205 non-coding downstream 98327 16330142 ~ 16332347 (-)
G94247 NA non-coding downstream 463331 15967014 ~ 15967343 (-)
G94425 NA non-coding upstream 83427 16515857 ~ 16518826 (-)
G94453 mlh1 non-coding upstream 135485 16567915 ~ 16569250 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding upstream 160995 16593425 ~ 16594731 (-)
G94511 NA non-coding upstream 552076 16984506 ~ 17015657 (-)
G94516 NA non-coding upstream 589673 17022103 ~ 17030063 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 4139 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 138295 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 261470 16009687 ~ 16169204 (-)
G94216 NA other downstream 545452 15877527 ~ 15885222 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other downstream 637134 15774777 ~ 15793540 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other upstream 942320 17374750 ~ 17387006 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 2113141 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 2525273 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 2853600 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 3430100 19862530 ~ 19907062 (-)

Expression


Co-expression Network