LOC122356088 (ate1,LOC107679187,LOC107655512)


Basic Information

Item Value
gene id LOC122356088
gene name ate1,LOC107679187,LOC107655512
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18545571 ~ 18672893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU140311
CACAGTTCAAGAGGTTCCTCTGTGACTCTCCTTTAGAGGCTGAGACCACTCCCGACGGCCCTGATGTGGGCTACGGCTCGTTTCATCAGCAGTATTGGTTGGATGGCAGAATAGTAGCTGTAGGAGTTGTGGACATCCTTCCCTCCTGTGTGTCGTCCGTGTACCTGTACTACCACCCCGACTTCTCCTCGCTCTCATTGGGCACCTACTCTGCTCTCAGGGAGATTGCCTTCACCAGGCAGTTGCAGCAGCAGTCGCCCAAACTGTCCTACTACTATCTGGGTTTCTACGTCCATTCATGTCCCAAGATGCGCTATAAGgGTCAGTACCGGCCTTCAGACCTCCTGTGCCCTGAAACGTACACTTGGGTGCCCATCGAGAGATGCATTCCCCGCCTTGATATCTCTGCGTACTCTCGTCTCAGTGAGAACACACAAGCAGGCGATGCTCGTGCGCTGAAGGAGCTGGCCAGGGTCTTAGTGCTTCACAGGAGGACAGTGATGCCATATGCAGCCTACGCTCGTAAGCGGAAGGGTTCGAACGACGAGAAGGAAGTGGAGCAGTACGCTAGTCTGGTGGGCCAGACATGTGCAGAGAGAATCCTGCTCTACAGAGCCTAGAACAACCCCTTCTTACCTTACGAccatctgtctttctttctctctgtttgtctttgGAAACATGTAAGAGTTTGTCCTCTTGTACACTTGTCTGTTTATTGTCTTCCTGATTGTTTATTTGTctgcttttcatctttttttttgtcttccagaAGTCTTTTCCCCATCTGTGTGTACagttttgttgtttttttttttttttgtactgctgtGCATTGCTTCACTCGCCCAGTCTTTCGTAATCTCTTTGAACtctacttttatattttctggCCAGCATCGCTTTGTAATAATCACGCTCGCGCACATGCAGCCGTTCATGTGTTATCTCATAGTGTATCCCAAAATATAACAACTCACCAATCACATCTTAACTAGCCGTAAAACAAGAAATAATGTACTATAGGGCATACTTTCATTCTGAACCCGTTTGGCTGGGTACTTCTAGACCGTTGTGAACCGTTTGGCCTTTGGTGACATAGATCACTGCTTTCCAAAAGTCCTGATATTTCTGTTCTTCTGAAGTGGTGATACTTTCCCGAGCAGGTGCTATGACGCATGGCTTTGCTGGAGGGTTAAATCAATCCATTTTCCCGTGGAACAGATTTGTCTTTTCTCGATCGAAGTAATAGCTTGagtgcttttgttttaatattattgttttgtttcaaactaaataaaaaaacgacaaaaaaacGA
>TU140313
CACAGTTCAAGAGGTTCCTCTGTGACTCTCCTTTAGAGGCTGAGACCACTCCCGACGGCCCTGATGTGGGCTACGGCTCGTTTCATCAGCAGTATTGGTTGGATGGCAGAATAGTAGCTGTAGGAGTTGTGGACATCCTTCCCTCCTGTGTGTCGTCCGTGTACCTGTACTACCACCCCGACTTCTCCTCGCTCTCATTGGGCACCTACTCTGCTCTCAGGGAGATTGCCTTCACCAGGCAGTTGCAGCAGCAGTCGCCCAAACTGTCCTACTACTATCTGGGTTTCTACGTCCATTCATGTCCCAAGATGCGCTATAAGgGTCAGTACCGGCCTTCAGACCTCCTGTGCCCTGAAACGTACACTTGGGTGCCCATCGAGAGATGCATTCCCCGCCTTGATATCTCTGCGTACTCTCGTCTCAGTGAGAACACACAAGCAGGCGATGCTCGTGCGCTGAAGGAGCTGGCCAGGGTCTTAGTGCTTCACAGGAGGACAGTGATGCCATATGCAGCCTACGCTCGTAAGCGGAAGGGTTCGAACGACGAGAAGGAAGTGGAGCAGTACGCTAGTCTGGTGGGCCAGACATGTGCAGAGAGAATCCTGCTCTACAGAGCCTAGAACAACCCCTTCTTACCTTACGAccatctgtctttctttctctctgtttgtctttgGAAACATGTAAGAGTTTGTCCTCTTGTACACTTGTCTGTTTATTGTCTTCCTGATTGTTTATTTGTctgcttttcatctttttttttgtcttccagaAGTCTTTTCCCCATCTGTGTGTACagttttgttgggttttttttttttgtactgctgtGCATTGCTTCACTCGCCCAGTCTTTCGTAATCTCTTTGAACtctacttttatattttctggCCAGCATCGCTTTGTAATAATCACGCTCGCGCACATGCAGCCGTTCATGTGTTATCTCATAGTGTATCCCAAAATATAACAACTCACCAATCACATCTTAACTAGCCGTAAAACAAGAAATAATGTACTATAGGGCATACTTTCATTCTGAACCCGTTTGGCTGGGTACTTCTAGACCGTTGTGAACCGTTTGGCCTTTGGTGACATAGATCACTGCTTTCCAAAAGTCCTGATATTTCTGTTCTTCTGAAGTGGTGATACTTTCCCGAGCAGGTGCTATGACGCATGGCTTTGCTGGAGGGTTAAATCAATCCATTTTCCCGTGGAACAGATTTGTCTTTTCTCGATCGAAGTAATAGCTTGagtgcttttgttttaatattattgttttgtttcaaactaaataaaaaaacgacaaaaaaacGA
>TU140314
CACAGTTCAAGAGGTTCCTCTGTGACTCTCCTTTAGAGGCTGAGACCACTCCCGACGGCCCTGATGTGGGCTACGGCTCGTTTCATCAGCAGTATTGGTTGGATGGCAGAATAGTAGCTGTAGGAGTTGTGGACATCCTTCCCTCCTGTGTGTCGTCCGTGTACCTGTACTACCACCCCGACTTCTCCTCGCTCTCATTGGGCACCTACTCTGCTCTCAGGGAGATTGCCTTCACCAGGCAGTTGCAGCAGCAGTCGCCCAAACTGTCCTACTACTATCTGGGTTTCTACGTCCATTCATGTCCCAAGATGCGCTATAAGgGTCAGTACCGGCCTTCAGACCTCCTGTGCCCTGAAACGTACACTTGGGTGCCCATCGAGAGATGCATTCCCCGCCTTGATATCTCTGCGTACTCTCGTCTCAGTGAGAACACACAAGCAGGCGATGCTCGTGCGCTGAAGGAGCTGGCCAGGGTCTTAGTGCTTCACAGGAGGACAGTGATGCCATATGCAGCCTACGCTCGTAAGCGGAAGGGTTCGAACGACGAGAAGGAAGTGGAGCAGTACGCTAGTCTGGTGGGCCAGACATGTGCAGAGAGAATCCTGCTCTACAGAGCCTAGAACAACCCCTTCTTACCTTACGAccatctgtctttctttctctctgtttgtctttgGAAACATGTAAGAGTTTGTCCTCTTGTACACTTGTCTGTTTATTGTCTTCCTGATTGTTTATTTGTctgcttttcatctttttttttgtcttccagaAGTCTTTTCCCCATCTGTGTGTACagttttgttgggtttttttttttgtactgctgtGCATTGCTTCACTCGCCCAGTCTTTCGTAATCTCTTTGAACtctacttttatattttctggCCAGCATCGCTTTGTAATAATCACGCTCGCGCACATGCAGCCGTTCATGTGTTATCTCATAGTGTATCCCAAAATATAACAACTCACCAATCACATCTTAACTAGCCGTAAAACAAGAAATAATGTACTATAGGGCATACTTTCATTCTGAACCCGTTTGGCTGGGTACTTCTAGACCGTTGTGAACCGTTTGGCCTTTGGTGACATAGATCACTGCTTTCCAAAAGTCCTGATATTTCTGTTCTTCTGAAGTGGTGATACTTTCCCGAGCAGGTGCTATGACGCATGGCTTTGCTGGAGGGTTAAATCAATCCATTTTCCCGTGGAACAGATTTGTCTTTTCTCGATCGAAGTAATAGCTTGagtgcttttgttttaatattattgttttgtttcaaactaaataaaaaaacgacaaaaaaacGA
>XR_006252272.1
CTGCGTACTCGTCTCAGTGAGAACACACAAGCAGGCGATGCTCGTGCGCTGAAGGAGCTGGCCAGGGTCTTAGTGCTTCACAGGAGGACAGTGATGCCATATGCAGCCTACGCTCGGAAGCGGAAGGGTTCGAACGACGAGAAGGAAGTGGAGCAGTACGCTAGTCTGGTGGGCCAGACATGTGCAGAGAGAATCCTGCTCTACAGAGCCTAGAACAACCCCTTCTTACCTTACGAccatctgtctttctttctctctgtttgtctttgGAAACATGTAAGAGTTTGTCCTCTTGTACACTTGTCTGTTTATTGTCTTCCTGATTGTTTATTTGTctgcttttcatctttttttttgtcttccagaAGTCTTTTCCCCATCTGTGTGTACagttttgttgggtttttttttttgtactgctgtGCATTGCTTCACTCGCCCAGTCTTTCGTAATCTCTTTGAACtctacttttatattttctggCCAGCATCGCTTTGTAATAATCACGCTCGCGCACATGCAGCCGTTCATGTGTTATCTCATAGTGTATCCCAAAATATAACAACTCACCAATCACATCTTAACTAGCCGTAAAACAAGAAATAATGTACTATAGGGCATACTTTCATTCTGAACCCGTTTGGCTGGGTACTTCTAGACCGTTGTGAACCGTTTGGCCTTTGGTGACATAGATCACTGCTTTCCAAAAGTCCTGATATTTCTGTTCTTCTGAAGTGGTGATACTTTCCCGAGCAGGTGCTATGACGCATGGCTTTGCTGGAGGGTTAAATCAATCCATTTTCCCGTGGAACAGATTTGTCTTTTCTCGATCGAAGTAATAGCTTGagtgcttttgttttaatattattgttttgtttcaaactaaataaaaaaacgacaaaaaaacGAAAAGATTTAA

Function

symbol description
ate1 Predicted to enable arginyltransferase activity. Predicted to act upstream of or within protein arginylation. Orthologous to human ATE1 (arginyltransferase 1).

NR:

description
arginyl-tRNA--protein transferase 1

GO:

id name namespace
GO:0016598 protein arginylation biological_process
GO:0004057 arginyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140311 True 1319 TUCP 0.46 7 18545581 18672893
TU140313 False 1318 TUCP 0.46 6 18545581 18672893
TU140314 False 1317 TUCP 0.46 6 18545581 18672893
XR_006252272.1 False 920 lncRNA 0.42 2 18545571 18561469

Neighbor

gene id symbol gene type direction distance location
fgfr2 fgfr2,LOC107724577 coding downstream 41294 18458198 ~ 18504277 (-)
ftr69 LOC107597643,LOC107679211 coding downstream 161861 18380035 ~ 18383710 (-)
LOC122356930 NA coding downstream 165548 18373868 ~ 18380023 (-)
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding downstream 464965 18073731 ~ 18080606 (-)
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding downstream 565462 17972876 ~ 17980109 (-)
LOC122356886 ate1,LOC107724575,LOC107679187,LOC107655512,LOC107597680 coding upstream 33456 18706349 ~ 18743542 (-)
LOC122356860 NA coding upstream 104775 18777668 ~ 18780239 (-)
slc29a1a slc29a1a,LOC107655740,LOC107733356 coding upstream 107482 18780375 ~ 18809580 (-)
LOC122356218 vip,LOC107655780,LOC107585469,LOC107597641,LOC107679148 coding upstream 157375 18830268 ~ 18832948 (-)
LOC122356839 acoxl coding upstream 302938 18975831 ~ 19008866 (-)
G94845 NA non-coding downstream 1587 18543652 ~ 18543984 (-)
G94843 NA non-coding downstream 4871 18540385 ~ 18540700 (-)
LOC122356994 NA non-coding downstream 89445 18452872 ~ 18456126 (-)
G94826 marcksl1a,LOC107597644,LOC107724621,LOC107679202,LOC107734268,LOC107655702,LOC107585455 non-coding downstream 174220 18218993 ~ 18371351 (-)
G94734 NA non-coding downstream 403787 18141523 ~ 18141784 (-)
G94941 NA non-coding upstream 243352 18916245 ~ 18916650 (-)
G94961 NA non-coding upstream 405667 19078560 ~ 19078839 (-)
G94978 NA non-coding upstream 496975 19169868 ~ 19170089 (-)
G94997 mertk,LOC107724611 non-coding upstream 528950 19201843 ~ 19208269 (-)
G95068 NA non-coding upstream 752670 19425563 ~ 19427926 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 1158565 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 2119036 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 2253192 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 2376367 16009687 ~ 16169204 (-)
G94216 NA other downstream 2660349 15877527 ~ 15885222 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 284810 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 613137 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1189637 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1236302 19909195 ~ 19921669 (-)
LOC122356211 gng4 other upstream 1591833 20264726 ~ 20275386 (-)

Expression


Co-expression Network