itga9 (itga9,LOC107688464,LOC107679186,LOC107585444)


Basic Information

Item Value
gene id itga9
gene name itga9,LOC107688464,LOC107679186,LOC107585444
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19286030 ~ 19362041 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU140608
gaggatccattggtgagcaactGATATGATGCATttatccaaatctgttcccatagagaaacaaactcatctacatcttggatggcctgattACATTTTCAGACTcttctcatttcatttcagtccAGTTAACAATATACGTTCTCggctttaatgtgttttgtttagtaTATGTGAAATTCACGGTTTAGAGCATTATTTGTACTGCACTGGATTTTGACCCCACTGAAAGATGCATgttattcaaaaaaatcttcataatctttcacaaaatatatgaactttttctgactttttttcgtATTCCTTTCCAACCACCTGTAAAATCGAAGCCGTTCACAATCTAGTCAGTTTCTAGTGGATGAAATCAACCCCACCCTAAAAGTTCTCCTTCTTTAACTCAGATACCAACTAACTGCTTGACCTCTGGCTGTCTAAGATCTCAAGACATGCATTTTAGATGTTATGCAGGGGGCGCATTCCAAGTGTAATATTACAATTCtactgatttctattttaaaaaaacactttaatctgCCATATATTCTCCAAAACTGTCCTACGGCATGTTCTGAATTACTCTTCTACAGTAAACGTGACTCAAAGTACGTCGCCTGCTTTTTAAGGGTtatgttcacccaaaaatgaattttggATGAAATCCTAGAGCTCTCTGACTCTCCACAGACAGCAAGAGTAAAGATCACAGTGAGGTCATCACTAAAATCGAAAAATtttatgacagaatgttcattttggggagggagctatccctttaacaagTCCCACGAAAGGTTTTTTTTGAAGTTAAGCCAGGTTTTAACCGTGCAGGAGTGTGTAATGGCCTAAAAATAGGTGGGAATGTGCAGTACTTCATCACTGGGCGCAAACTCACACTCGTCTGGAGCTTATGGGAACGTTTTGGACTTCACTCAGAGTGCTGTTCGCCGTCAGACTTTACATGAAGTCTTTCATCCAGTGAACTTGGCGGTTTGCTTTTGCATTTTCCTCTCATTTTAGAGGGTCCGTTCAAAAGAGACCGTTTCTTTGACGTTTACCAACCGATCGATAGCTTTGCAATTGGATATTAGAAGATCGCTGGAAGATTCTCCAAAAAATATATCTCGTATTATCTGATCAATAATCACCACTGGCATGTCCGGCCCAACACCAGGTTCTTGTATAGGTGTGTTTCAGAGAGACACATACTTGACATTGTAAGTGTGTAACCTAACTGTGAGTGTTGTTGCCATTATCACCTATTTTGAGCATTTTAGAATAAACTACTGTCACTGATGTTTTATAGATGTATTGAGAAATATGTTTGTTGTACAAGCTCAAGCTGTATATTTATCTACTgaaactgcttttttaaaattaaaaatcac
>XM_043255441.1
CCACGAGAAACTCCGGAGACGCGacagaagagaagaggagagcCGTGCGATGAGAGCGCTGTCCTGACCCGAACCTCCGACTCACGAACTCAGACCCCGCGGGTGCATGCGTTTCATCCCCGGCTTTAAGAAGAGGACGCGGCGTCGTTAGATAAATGTAGTTTTCCCGTCTCTTTTGGCGCTCTGTCGACAGATTTAATAGCTTCTGTAAAGTTCTCATCGGCACTGAGGATGCGCTGCGGGATGACGGACCTTTCTACGCGGAGGAGACGCGCTTTGGATGTTTTTGCGTCTTTGTGTTTGGTTTCTTTGGCTTATTCCTTCAACATCGACTTACAACATCCCTTGGTCTTCCGAGGACCAGATGCGACGTTTTTTGGATATTCAGTGCTGGAGCACGTCCATGACAGCACACGCTGGATTGTGGTCGGGGCTCCCAGAGCAAACTCATCGTTCAGCGGTTCGGTTCAGTCCCCCGGGGCCGTGTACAAGTGCCGGATCCGAAACAACCCGGAGCGACGCTGCACTGAGATGGACCTCGGCAGAGGAAATAAGCAGAGGGAGTCCTGTGGGAGGACGTGTCAAGGAGACAGGAACGACGAGTGGATGGGGGTCAGTCTGGCTCGACAGGACAAACCCAACGGCAAAATTCTGGCCTGTGCTCACCGCTGGAAGAATGTATATTACGAATCGGAGTATATCCTCCCTCACGGATACTGCTCCGTCATCCCAGCCACACTGCAGGGCAAGTCCCAGCCTCTCATACCGTGTTATGAAGACCATAAGAAGACCTATGGGGAAGAACACGGCTCGTGCCAAGCCGGCATCGCAGGAGTTTTCACTGAGgAGCTGGTCATCATGGGCGCGCCTGGTTCTTACTACTGGACTGGAACGGTCAAAGTGTTCAACATGACATCCAATGCTCACTacaacctaaatcaagacaacCTGAGGCTTCTCAGATACAGCTACCTCGGGTATGCTGTGACTGCCGGTCACTTCTCCTCCCTGAACACCGTCGATGTGGCGGCTAGCGCTCCTCGAGACAGTGGTGGTGGAAAAGTTTACATCTTCAGAATCGAAGGGACGTCTCTCGTGAAGACTTTTGAAGCCTCAGGAAAAATGATGGGCTCTTACTTTGGCTCCTCATTGTGTGCAGTTGACCTAAACGCGGACGGACTGTCGGACTTGCTGGTGGGAGCACCCATGCACAGCGAGATCCGGGACGAAGGCCAGGTCTCTGTTTACCTCAGCGGTGGCAACGGAGTGATGGAGGAAGTTGCGACATTGAACGGTGACAATGCATACAATGCTCATTTTGGAGAGTGCATCACGTCTCTCGGGGACATCGATGATGATGGCTACCAAGATGTAGCGATTGGAGCCCCTAAAGAGGATGACTATGGAGGAGCCGTCTACATCTACCACGGGGACGCTACAGGAATAGTTAACAAGTACTCAATGAGGCTGTCTGGTCGAAGCATCAACCCCACCCTGCGAATGTTCGGCCAGTCGATTTCCGGCAATGTGGACATGGATGGAAACGGATATCCAGATGTGACGATAGGGGCCTTCATGGCTGACAGTGTGGTTTTGTTAAGATCCAGGCCAGTGATCTCCGTGGACGTCTCCATCTTTCTGCCCGTCTCCATAAACATCACAGTACCTCAGTGTCACGAGGGTCCTCAGCATCTCAACTGCTTCAACGTCACCGTCTGCATGAGCTTTCGAGGAAAACATGTTCCTGGCCACATAGAGTTGCTGTACAATCTAACTGCAGATTCAGATAAGAGACGCAGAGGTTTGCCGCCGCGGGTGTATTTTGGGAACGGTGGAGAGCAGACAGTTGCTGTAAGTCAGCGCTTCGGCCTGGAGGTCAACCGAGCACAGTGTCATCGGTACACAGCCTTCGTGAGGAAGGAAGTAAAGGATGTGTTTGCCGCCATCGTATTTGAGGCAGCGTACAGTTTAGGAAAACACGTTTTGGATGGACACCAGGATCGTGACCTTCCCTCACTCACTCCTATTTTACGCTGGAAAAAAGGAGAGAAGATCGCTGCAAAGAATGAGACGTGGTTTGAGAAGAACTGTCTGTCAGAGGACTGCGCCGCTGACCTGAGGCTTCATGGGAAACTGCTGCTTTCTGGGCGTTACGTCAGTTCTCATCTGGCTCTTGGTGGAGTTAGAAACGTCTCGTTAAATTTAACCATCTCTAATGCTGGAGATGACGCCTACGACACCAACATCTACTTCAACTTCTCCAGAGAGGTTCACTACATCAACTTCTTACAAAGAGAAGAGAAGGGCATTTCCTGTATGCTGGTAGAGCTGGACTTCCTCAAGTGCAGCGTTGGGTTTCCTTTCATGAGAGCGCAAACCAAGtaccaTCTATCGGTGCTTTTCGACACAAGTCGTCTGTCTGGTGAAAATGAGACGCTGCTATTTTTAGTTCACGCTAGAAGcGCCAATCCAGAACACGATAGCACACTTGATGATAACACATTGGAGTTGTCCATACCGCTGGTACATGAGGTGGATACAGCAATCACAGGTGTGGTCATGCCTACATCTTTTGTGTATGGAAACTCAGTGGACCGATCACGCTTCCTTCAGCTGGAGGACATGGAGTGCAGCTTTCAGCCGCTCAACTTCACCTTTCAGGTGATAAACAATGGGCCCAGCAGACTTCCAGGCTCCACGGTGGACATCAGGATACCCAACCGCCTGGCTGGTAACGGAGCAGATATGTTTCATATCATCGACACACAAGTATCTGAAGGTCGAGGGAACTGCACGTGGCACAAGAACCCCAAACCCTGCACAATCCCTCAGGACAAAGAGAGCATCTTCCACACCATTTTTGCTTTCTTCACCAAATCAGGCAGAAAAGTTCTGGACTGTGACCGGCCTGGCAGAGCGTGTCTTACTATTTCCTGCAGTCTGAGCTCTCAGGCTAAAGAAGAAGCCACGAGTATAGATGTGCAAATGCTACTGAACACTGAAATACTACAGAGGGACAGCTCCTCTGTGATCCAGTTTGTGACACGAGGTCACGTCCAGCTGGACGACAGGGCCGTGGAGGTCTCAACCGGACTTCCAGACGAGATTTCTCTGGTGTTTGAGGCCCTTCACAGTCAGGAGCCCAGGGGTTACGTGGTGGGATGGATCATCGCCATCAGCCTCCTCGTGGGAATCCTCATCTTCCTGCTTCTGGCGGTGCTGCTCTGGAAGATGGGCTTCTTCAGGAGACATTACAGAGAGATCATAGAAGCCGAAAAGAACAGGAAGGACAGCGATGAAAGCTGGGACTGGGTCCAGAAGAGCCAATGAGAGCTTGGATTGGGTTCAGAAAATCCAATAAGCTGCTAACTTCACCACGGCTCTCTCCTAAGACCCAGACCCTCCAGCCTTCCATATGTGGAAGAAAAGAATATTCTCCAGATTTTTCGGAGGTTTGACACTTTTTGTTTGTCGTTGATGGTGATGTTCGAGGTGTCCGCGTGGACCTCCATCGATCCCCGATGGAACCGGCCTCTTTGCCGGTGGGTCCGAAGAGACGGAAAGAGAGACTTCCTGGAATGAATGTGGATATCGTGTCAATACTAGCAGACAATTACAACCCTCAGGGcgctgttgaaaaaaaaaatctattttttataaaaCGTATTCCATACTGTATAGAAGAGAGCTTCAAgagttgtttttaaagcacTGATGACTGACGCACGCCAAAGAGTTGATGTTATTCCTTCACAGTGTTCTGGTGCACATCGGTTTTCAGATGAACCTTGAAGATGGATTGTACCTCTTTGTCCCCTCGAGAAGCCGACTCGCAAAGAGTGCAGAGCAAAACTTGGTGTCCTTCCTCCGGACAGCTTGCATGTTGTTATTGCTCGGTTcgttaaaggagtagttcacctcaaaatgaaagtttgctgaaaatgcactCATCGCcgggccatccgagatgtagatgagtccGTTTCTTCGTGAGAACAGATTTGGGGAAATGAAgcatgaatgggtgccgtcagaatgagagtccagacGAAGTGCCTTGATGCACAAAGAGTGCTGCGAATTATtgcgtttttatcagctgttttgactctcattctgacggcacccattcactgcagaggatccattggtgagcaactGATATGATGCATttatccaaatctgttcccatagagaaacaaactcatctacatcttggatggcctgattACATTTTCAGACTcttctcatttcatttcagtccAGTTAACAATATACGTTCTCggctttaatgtgttttgtttagtaTATGTGAAATTCACGGTTTAGAGCATTATTTGTACTGCACTGGATTTTGACCCCACTGAAAGATGCATgttattcaaaaaaatcttcataatctttcacaaaatatatgaactttttctgactttttttcgtATTCCTTTCCAACCACCTGTAAAATCGAAGCCGTTCACAATCTAGTCAGTTTCTAGTGGATGAAATCAACCCCACCCTAAAAGTTCTCCTTCTTTAACTCAGATACCAACTAACTGCTTGACCTCTGGCTGTCTAAGATCTCAAGACATGCATTTTAGATGTTATGCAGGGGGCGCATTCCAAGTGTAATATTACAATTCtactgatttctattttaaaaaaacactttaatctgCCATATATTCTCCAAAACTGTCCTACGGCATGTTCTGAATTACTCTTCTACAGTAAACGTGACTCAAAGTACGTCGCCTGCTTTTTAAGGGTtatgttcacccaaaaatgaattttggATGAAATCCTAGAGCTCTCTGACTCTCCACAGACAGCAAGAGTAAAGATCACAGTGAGGTCATCACTAAAATCGAAAAATtttatgacagaatgttcattttggggagggagctatccctttaacaagTCCCACGAAAGGTTTTTTTTGAAGTTAAGCCAGGTTTTAACCGTGCAGGAGTGTGTAATGGCCTAAAAATAGGTGGGAATGTGCAGTACTTCATCACTGGGCGCAAACTCACACTCGTCTGGAGCTTATGGGAACGTTTTGGACTTCACTCAGAGTGCTGTTCGCCGTCAGACTTTACATGAAGTCTTTCATCCAGTGAACTTGGCGGTTTGCTTTTGCATTTTCCTCTCATTTTAGAGGGTCCGTTCAAAAGAGACCGTTTCTTTGACGTTTACCAACCGATCGATAGCTTTGCAATTGGATATTAGAAGATCGCTGGAAGATTCTCCAAAAAATATATCTCGTATTATCTGATCAATAATCACCACTGGCATGTCCGGCCCAACACCAGGTTCTTGTATAGGTGTGTTTCAGAGAGACACATACTTGACATTGTAAGTGTGTAACCTAACTGTGAGTGTTGTTGCCATTATCACCTATTTTGAGCATTTTAGAATAAACTACTGTCACTGATGTTTTATAGATGTATTGAGAAATATGTTTGTTGTACAAGCTCAAGCTGTATATTTATCTACTgaaactgcttttttaaaattaaaaatcacaaacaga

Function

symbol description
itga9 Acts upstream of or within lymphangiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; epidermis; fin bud; pigment cell; and trunk. Human ortholog(s) of this gene implicated in cerebral infarction; hypertension; and pancreatic cancer. Orthologous to human ITGA9 (integrin subunit alpha 9).

NR:

description
integrin alpha-9

GO: NA

KEGG:

id description
K06585 ITGA9; integrin alpha 9

RNA

RNA id representative length rna type GC content exon number start site end site
TU140608 False 1388 lncRNA 0.38 1 19286037 19287424
XM_043255441.1 True 5533 mRNA 0.47 28 19286030 19362041

Neighbor

gene id symbol gene type direction distance location
LOC122357009 NA coding downstream 19521 19258386 ~ 19266509 (-)
zmp:0000001138 LOC107733342,LOC107679128,LOC107754581,LOC107597635,LOC107585445 coding downstream 38452 19245604 ~ 19247578 (-)
LOC122357016 fbln7,LOC107679196,LOC107754577,LOC107585467,LOC107733340,LOC107688955,LOC107597673 coding downstream 41183 19222056 ~ 19244847 (-)
LOC122356839 acoxl coding downstream 277164 18975831 ~ 19008866 (-)
LOC122356218 vip,LOC107655780,LOC107585469,LOC107597641,LOC107679148 coding downstream 453082 18830268 ~ 18832948 (-)
golga4 golga4,LOC107724992,LOC107688375,LOC107733336,LOC107679131 coding upstream 1531 19363572 ~ 19399890 (-)
kcnk12 LOC107679129,LOC107585442,LOC107688640,LOC108430255 coding upstream 67795 19429836 ~ 19460397 (-)
fbxo11a fbxo11a,LOC107725019,LOC107679165,LOC107733352,LOC107588452,LOC108413220,LOC108430631,LOC107667079 coding upstream 143821 19505862 ~ 19532003 (-)
ntpcr ntpcr,LOC107557727 coding upstream 318204 19680245 ~ 19685333 (-)
map10 NA coding upstream 323878 19685919 ~ 19688933 (-)
G94997 mertk,LOC107724611 non-coding downstream 77761 19201843 ~ 19208269 (-)
G94978 NA non-coding downstream 115941 19169868 ~ 19170089 (-)
G94961 NA non-coding downstream 207191 19078560 ~ 19078839 (-)
G94941 NA non-coding downstream 369380 18916245 ~ 18916650 (-)
G94849 NA non-coding downstream 658718 18623483 ~ 18627312 (-)
G95068 NA non-coding upstream 63522 19425563 ~ 19427926 (-)
G95110 NA non-coding upstream 229831 19591872 ~ 19593376 (-)
G95147 NA non-coding upstream 307668 19669709 ~ 19670331 (-)
LOC122356282 NA non-coding upstream 456012 19818053 ~ 19835653 (-)
G95190 NA non-coding upstream 484260 19846301 ~ 19846534 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other downstream 310506 18957703 ~ 18975524 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other downstream 613137 18545571 ~ 18672893 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 1899024 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 2859495 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 2993651 16290154 ~ 16292379 (-)
disc1 LOC107666898,LOC107730373 other upstream 500489 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 547154 19909195 ~ 19921669 (-)
LOC122356211 gng4 other upstream 902685 20264726 ~ 20275386 (-)
G95520 NA other upstream 1117884 20479925 ~ 20486704 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other upstream 1126744 20488785 ~ 20492076 (-)

Expression


Co-expression Network