G95212 (tsnax,LOC107690806,LOC107730374,LOC107557734,LOC107667162,LOC107564242)


Basic Information

Item Value
gene id G95212
gene name tsnax,LOC107690806,LOC107730374,LOC107557734,LOC107667162,LOC107564242
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19909266 ~ 19910115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU140813
CAGCTGggtaaaatcaattaaatgggGTGTTTAAGAAATACATGAGTCTCTCCTATAATATGGTGGTCTCCCTAAAGTGATCTGCTGAGATGGAGCCGTTTGTACcaaaaaagagttttattgACAGCTCTGAGGCtgtttgatttcaaaataatggtAAACACGTTTATAACTTTCAGGAAGATTAGAAGGAACGAGATCAGTTAACCATTTAGCAATGCGTATGAAATGCACCAGCTCAAAACTAAAGAACTAGACGCGTTAACAACATGCAACCATTGAAACGAAGATAGCAAAGTCCGACATACGCAGGGAAGGAGACGCGTCTCACACCATGGGCTCCTCCGGGTCCAGGTGCGTCGCCGCCCTGCTGGCGAACACATCGGCCAGCATGTGTTTGGGAATCTCGGATCCGCGCACGCGCAGGGTGTAGCACGCgtcctccaccttccccaggcTCTGCCGCAGCGTGTGCAGTTTCTTGGACACCTCGTAGGGCCCCGTGTTCCCGATGTAGGAGAAGCCGTCGTGGATTTCCCGCAGGAAGCCGCTGAGCTGGAAGGGCGTGTCTATGTCTCCGTTGCCCACGCTGCTTATGCACATGCGCATCAGTTCACCCGTGAGGTCGGCGACGCCCAGCAGGTAGTCGGTCGGCGTTATCTGGAAGGTTAATACACTCGGGCCTGTGCATGTGACCTCGCCTTcacccttcagagagagagagagagagagagagagagagagacagagagagagacagagcgagagagagacagag

Function

symbol description
tsnax Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human TSNAX (translin associated factor X).

NR:

description
PREDICTED: translin-associated protein X-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140813 True 778 lncRNA 0.52 2 19909266 19910115

Neighbor

gene id symbol gene type direction distance location
LOC122356808 sipa1l2,LOC107667119,LOC102793238 coding upstream 103658 19689750 ~ 19805608 (+)
msh6 msh6,LOC107725009,LOC107588437 coding upstream 403837 19494929 ~ 19505429 (+)
LOC122357010 LOC107754576,LOC107679191,LOC107733337,LOC107585410,LOC107688298,LOC107597633 coding upstream 650903 19249531 ~ 19258363 (+)
zmp:0000001006 NA coding upstream 659877 19247599 ~ 19249389 (+)
tmem87b LOC107597636,LOC107688162,LOC107585411,LOC107679197,LOC107724612,LOC107733328 coding upstream 689765 19208840 ~ 19219501 (+)
LOC122356779 egln1a,LOC107690805,LOC107728333,LOC107730384,LOC107557733,LOC107667047,LOC107564238 coding downstream 69676 19979791 ~ 19995620 (+)
ggps1 ggps1,LOC107728322,LOC107730383 coding downstream 310165 20220280 ~ 20241921 (+)
gpr137ba gpr137b,LOC100001171,LOC105902257,LOC103372511,LOC100698978,LOC102208596 coding downstream 595308 20505423 ~ 20520084 (+)
LOC122356151 cox5b2,LOC107689371,LOC107689755,LOC105923605,LOC102227912,LOC106952680,LOC108240632 coding downstream 711132 20621247 ~ 20623139 (+)
LOC122356546 LOC107565068 coding downstream 743969 20654084 ~ 20661380 (+)
G95195 NA non-coding upstream 40864 19866249 ~ 19868402 (+)
G95194 LOC107728326,LOC107564234,LOC107667056 non-coding upstream 41155 19862529 ~ 19868111 (+)
G95192 NA non-coding upstream 49923 19859119 ~ 19859343 (+)
G95191 NA non-coding upstream 51264 19857687 ~ 19858002 (+)
G95123 NA non-coding upstream 220366 19683422 ~ 19688900 (+)
G95217 NA non-coding downstream 6727 19916842 ~ 19973786 (+)
G95219 NA non-coding downstream 10177 19920292 ~ 19976350 (+)
G95245 NA non-coding downstream 115532 20025647 ~ 20026888 (+)
G95254 NA non-coding downstream 147519 20057634 ~ 20058884 (+)
G95255 NA non-coding downstream 149343 20059458 ~ 20059706 (+)
LOC122356529 LOC107667070,LOC107589360,LOC107719701,LOC107676301,LOC107733333,LOC107725060,LOC107570100 other upstream 241825 19618012 ~ 19667441 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other upstream 318982 19555598 ~ 19590284 (+)
lhcgr lhcgr,LOC107688869,LOC107679161,LOC107733338 other upstream 739239 19156282 ~ 19170027 (+)
G94776 NA other upstream 1277548 18545352 ~ 18631718 (+)
G94789 LOC107563058 other upstream 1371823 18536892 ~ 18537443 (+)
G95223 NA other downstream 37415 19947530 ~ 20004002 (+)
G95239 irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 other downstream 167170 20077285 ~ 20102120 (+)
G95327 NA other downstream 456110 20366225 ~ 20494176 (+)
dnajc12 dnajc12,LOC107728315,LOC107750135 other downstream 707068 20617183 ~ 20619621 (+)
G95558 NA other downstream 1041941 20952056 ~ 20956174 (+)

Expression


Co-expression Network