dnajc12 (dnajc12,LOC107728315,LOC107750135)


Basic Information

Item Value
gene id dnajc12
gene name dnajc12,LOC107728315,LOC107750135
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20617183 ~ 20619621 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU141085
GGAGGCGATACTGAACCGCAGAAAGGAGGATCTGGAGGATTATTACGGGCTTCTCGGCTGCGATGAACTCTCAACGACTGAACAGATTGTCAATGAGTTTAAAGTGAGAGCTCTGGCCTGCCATCCAGACAAACACCCAGAGAACCCCAAAGCAGtggagGAGTTCCAGAAGCTACAGGAGGCGAAGGAGACTCTGACGGACGAGGAGAAGCGAAAGAGCTACGATCTCTGGCTCAGAAGTCGGCTGGCTGTCCCGTTCAGCGAGTGGCGAGCGCTCAGCGACTCGGTGAAAACGTCGATGCACTGGGCCACGAGGAGCAAGAAGGAGCCGATGCTTGAGGCTCCAGAAGAGCCGGATCCGGTGAGTCTGTCAGAGGAAGCGTCTGAAGCGGCTCCGCCGTCCGATGATCACCGGCCTCGCGGCTTTCGCTGGGCTGGTGAAGCTCCCTCGGGACTTCTACTGAAGTTCAGGAACTATGAGATATAAATGCACGCTTCTTTTCTTGGCTTTTGCGTGCACTCCGTACGAGAAGGAAGGAAGACGCGTCTGAGCGATCGCTTGCCGCTGTGTGTAGCATTGActtggtgtttgtttgtttgatagaAAGTGTTCAGCAGCAACGCTTGCAATGCCTTAAATGTccaatcagaatgattttttttggttgagTAGCAGTATTTAGCACATTTGCAcaataataaagtttattttaatggatATAgtgcataaattaataatgcagt
>XM_043255901.1
aCTCTCTGCGtcaaaactttttgtttcttgttttcacTAAATCGCAGCTTTAATTCGCAAGGACGGCGTTTTATCGCGAGTCAGAGCGCCTGCGTCACGCTGGCCCTTTAAAAAGCGCGTCTACCGTAAAGCGCCGAATACTCACGCGCGTGCGCGCTGCGTTGCCCGCGACCGGGCGGCGGGAGCGCTCGTTTGCGGGAGATTACGGTAGTTTCGTGTTTAGTTGCGTGTAGCAGGCATGGAGGCGATACTGAACCGCAGAAAGGAGGATCTGGAGGATTATTACGGGCTTCTCGGCTGCGATGAACTCTCAACGACTGAACAGATTGTCAATGAGTTTAAAGTGAGAGCTCTGGCCTGCCATCCAGACAAACACCCAGAGAACCCCAAAGCAGtggagGAGTTCCAGAAGCTACAGGAGGCGAAGGAGACTCTGACGGACGAGGAGAAGCGAAAGAGCTACGATCTCTGGCTCAGAAGTCGGCTGGCTGTCCCGTTCAGCGAGTGGCGAGCGCTCAGCGACTCGGTGAAAACGTCGATGCACTGGGCCACGAGGAGCAAGAAGGAGCCGATGCTTGAGGCTCCAGAAGAGCCGGATCCGGTGAGTCTGTCAGAGGAAGCGTCTGAAGCGGCTCCGCCGTCCGATGATCACCGGCCTCGCGGCTTTCGCTGGGCTGGTGAAGCTCCCTCGGGACTTCTACTGAAGTTCAGGAACTATGAGATATAAATGCACGCTTCTTTTCTTGGCTTTTGCGTGCACTCCGTACGAGAAGGAAGGAAGACGCGTCTGAGCGATCGCTTGCCGCTGTGTGTAGCATTGActtggtgtttgtttgtttgatagaAAGTGTTCAGCAGCAACGCTTGCAATGCCTTAAATGTccaatcagaatgattttttttggttgagTAGCAGTATTTAGCACATTTGCAcaataataaagtttattttaatggatATAgtgcataaattaataatgcagtaac

Function

symbol description
dnajc12 Orthologous to human DNAJC12 (DnaJ heat shock protein family (Hsp40) member C12).

NR:

description
dnaJ homolog subfamily C member 12

GO: NA

KEGG:

id description
K09532 DNAJC12; DnaJ homolog subfamily C member 12

RNA

RNA id representative length rna type GC content exon number start site end site
TU141085 False 744 lncRNA 0.51 5 20617423 20619618
XM_043255901.1 True 987 mRNA 0.52 5 20617183 20619621

Neighbor

gene id symbol gene type direction distance location
gpr137ba gpr137b,LOC100001171,LOC105902257,LOC103372511,LOC100698978,LOC102208596 coding upstream 97099 20505423 ~ 20520084 (+)
ggps1 ggps1,LOC107728322,LOC107730383 coding upstream 375262 20220280 ~ 20241921 (+)
LOC122356779 egln1a,LOC107690805,LOC107728333,LOC107730384,LOC107557733,LOC107667047,LOC107564238 coding upstream 621563 19979791 ~ 19995620 (+)
LOC122356808 sipa1l2,LOC107667119,LOC102793238 coding upstream 811575 19689750 ~ 19805608 (+)
msh6 msh6,LOC107725009,LOC107588437 coding upstream 1111754 19494929 ~ 19505429 (+)
LOC122356151 cox5b2,LOC107689371,LOC107689755,LOC105923605,LOC102227912,LOC106952680,LOC108240632 coding downstream 1626 20621247 ~ 20623139 (+)
LOC122356546 LOC107565068 coding downstream 34463 20654084 ~ 20661380 (+)
dntt dntt,LOC107689760,LOC107562388,LOC107689364 coding downstream 76368 20695989 ~ 20725867 (+)
hs3st1l1 hs3st1l1,LOC107720583,LOC107750130,LOC107565063,LOC107686529,LOC107562391,LOC108426770 coding downstream 245364 20864985 ~ 20910740 (+)
LOC122356250 adgra1,LOC107567015,LOC107750141,LOC107570923,LOC107663568,LOC107720869 coding downstream 423280 21042901 ~ 21118201 (+)
G95395 NA non-coding upstream 39221 20576984 ~ 20577962 (+)
G95386 NA non-coding upstream 45601 20570460 ~ 20571582 (+)
G95384 NA non-coding upstream 49837 20542165 ~ 20567346 (+)
G95381 NA non-coding upstream 54858 20535061 ~ 20562325 (+)
G95361 LOC107691203,LOC107750138 non-coding upstream 125934 20363309 ~ 20491249 (+)
G95416 NA non-coding downstream 437 20620058 ~ 20620594 (+)
G95423 NA non-coding downstream 15076 20634697 ~ 20635126 (+)
G95554 NA non-coding downstream 384422 21004043 ~ 21140875 (+)
G95588 NA non-coding downstream 498656 21118277 ~ 21119915 (+)
LOC122357032 NA non-coding downstream 739730 21359351 ~ 21368683 (+)
G95327 NA other upstream 123007 20366225 ~ 20494176 (+)
G95239 irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 other upstream 515063 20077285 ~ 20102120 (+)
G95223 NA other upstream 613181 19947530 ~ 20004002 (+)
LOC122356529 LOC107667070,LOC107589360,LOC107719701,LOC107676301,LOC107733333,LOC107725060,LOC107570100 other upstream 949742 19618012 ~ 19667441 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other upstream 1026899 19555598 ~ 19590284 (+)
G95558 NA other downstream 332435 20952056 ~ 20956174 (+)
G95598 adgra1,LOC107689349,LOC107567015,LOC107570923,LOC107750141,LOC107663568 other downstream 559231 21178852 ~ 21180678 (+)
LOC122357027 LOC107567957,LOC107705465,LOC107564371,LOC107574018,LOC107697810,LOC103910014,LOC107573027 other downstream 877120 21496741 ~ 21506599 (+)
LOC122357026 NA other downstream 1163349 21782970 ~ 21833016 (+)
G95864 NA other downstream 1663242 22282863 ~ 22284050 (+)

Expression


Co-expression Network