LOC122356209


Basic Information

Item Value
gene id LOC122356209
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20108191 ~ 20140958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU141210
GTAGATTTATTGATCCGAGCACGTTAGTTTTATGAATAATACTAATTATCAAGCAACGAATTCATGATTATTAAACCGAACGAGGATATAATCACTGGATTTGCTGACGTTTATCAGAGATCAAGATAAGCCACCGTCCTACACAAAAAGTGCATGTGGGTCGCATGAATAATGGATACGCGGCTTGAACTCCCGCTGAACTCCAGCTTTGTCAAGTGGAGATCTACAGCAAACCTGCACGCCCATTCCACATATCCTGCGCCGTGCTGATGTGGCCGTTCATTCATCCGTTCGGAGCGGCTGTCCCGGCTCTGGGTGCGGCCGATCGGCTGACACACTCA
>XR_006252294.1
TCTATTAAATGTACGTGTTGGTCACTGCTGCTGTTTCGTTTCTCTGTATGCAAAAGATCATTAATtatcagggttgccaggtctgctaattaaaagtaaaagcaaacCTCCCCCTCGATCCGCGGCGAGTGTCGAAGTAGCACGATTACGCGGGAAAACTACCTcgtgtttacaaaaaaagtcattggaACGTAACGTTAAAAAAAACCGCGTAGGGACGTTGCACGCTGACAAACCGGAAACGCCCGAGACGAACTACGCGTAAAGCGGAAGTAGATTTATTGATCCGAGCACGTTAGTTTTATGAATAATACTAATTATCAAGCAACGAATTCATGATTATTAAACCGAACGAGGATATAATCACTGGATTTGCTGACGTTTATCAGAGATCAAGATAAGCCACCGTCCTACACAAAAAGTGCATGTGGGTCGCATGAATAATGGATACGCGGCTTGAACTCCCGCTGAACTCCAGCTTTGTCAAGTGGAGATCTACAGCAAACCTGCACGCCCATTCCACATATCCTGCGCCGTGCTGATGTGGCCGTTCATTCATCCGTTCGGAGCGGCTGTCCCGGCTCTGGGTGCGGCCGATCGGCTGACACACTCAAACAAGctgttgcACATGTGGCACATCTGGCGCTCTGCCTGAATCATTACTTACTTTTTATGTTCGGCCCGGCCGTCGCCATGGAAACTGCTGCATGTTTGGCAGCGAGCCTTTGAAGGAGAGCGAGAGCAGCCGCGCGCAACAGAGAGGATTGCGAGCTCTCAGGAATTGGCCTACATCCAGTGTAATCATGGCGGGAGCTGAAATGAGGCTTTTGGCAGCACACCAGGTTTCAGAGAACAAAGATGTGAGCCACTAATGTTGGCTGCAGAGCCTGCTTGGCATCCTTTACCatttcccagcagcccctgccaCGGCTGCCTGCCAAGCCGCCCTCCCTCCCCCCCGTCCCTCCCCTGCTGGGACTGCAAAGAGGATCTGAATAAAGAAAGAGAGTTGTTTTTCTCCAGCTCCTCTGCTCCAATGACATCACCTCTGCAGCCTCCAGCCCCCAGATTCCAGACGCCCAGCACATTTCTTCTGCTCCTCTCTCCCAGGCCCTCCATTTTGACTAAATTCCTCCATTTTATAATTGCTCGACCTCCTCGATGTCACCAAATGTTTGCTGTTTGCCCAGACAAAGCCAGAATGCGCCGACGAGTATGTTTTTTTGGACACTATGTAATGCACACAGTTCGTAACAACAAGATAAATGTAGAATACCCAGAATTGGGATAATTCCGCAGTTCTCTTTcttcacatgtgtgtgtgtgtgtgtgtgtgtgtgtgcacatgcatatatttgtcaGCTATAACATGCATTTGTCAAATAACAATGTAGAATAGAAACGTGtagacaaagaaaataaaacttaatggTTAACTTGGAGTTAAAAGTGGCATGggagaggtttatcttcaatgttagattttctgtcacaccataggacacactGATACATCAACTatccacgcacacacacacacacacacacacacacacacacacacaatataagaAATTACTATTCAATTCTCGAAACaggcatatatgtatatgttttaacaGTAA

Function

GO:

id name namespace
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141210 False 341 lncRNA 0.48 2 20114726 20140686
XR_006252294.1 True 1625 lncRNA 0.47 3 20108191 20140958

Neighbor

gene id symbol gene type direction distance location
irf2bp2a irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 coding downstream 4319 20101059 ~ 20103872 (-)
LOC122356780 NA coding downstream 71718 20025669 ~ 20036473 (-)
LOC122356781 NA coding downstream 82930 19996649 ~ 20025261 (-)
map10 NA coding downstream 419258 19685919 ~ 19688933 (-)
ntpcr ntpcr,LOC107557727 coding downstream 422858 19680245 ~ 19685333 (-)
tomm20a tomm20a,LOC107690811,LOC107728308,LOC107667141,LOC108247505 coding upstream 1591 20142549 ~ 20145468 (-)
LOC122357145 NA coding upstream 2638 20143596 ~ 20143727 (-)
arid4b arid4b,LOC107690809,LOC107557720,LOC107667027,LOC107728306 coding upstream 9500 20150458 ~ 20218900 (-)
b3galnt2 b3galnt2,LOC107730378,LOC107667096,LOC107728324 coding upstream 104529 20245487 ~ 20264253 (-)
lyst lyst,LOC107691204,LOC107728318,LOC107689764,LOC107569426 coding upstream 134819 20275777 ~ 20345682 (-)
G95469 NA non-coding downstream 32254 20075371 ~ 20075937 (-)
G95190 NA non-coding downstream 261657 19846301 ~ 19846534 (-)
LOC122356282 NA non-coding downstream 272538 19818053 ~ 19835653 (-)
G95147 NA non-coding downstream 437860 19669709 ~ 19670331 (-)
G95110 NA non-coding downstream 514815 19591872 ~ 19593376 (-)
G95506 NA non-coding upstream 95720 20236678 ~ 20238227 (-)
G95519 NA non-coding upstream 373815 20514773 ~ 20515311 (-)
G95524 NA non-coding upstream 377642 20518600 ~ 20520093 (-)
G95537 NA non-coding upstream 479089 20620047 ~ 20620719 (-)
G95535 NA non-coding upstream 480304 20621262 ~ 20678269 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other downstream 186522 19909195 ~ 19921669 (-)
disc1 LOC107666898,LOC107730373 other downstream 201129 19862530 ~ 19907062 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other downstream 746150 19286030 ~ 19362041 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other downstream 1132667 18957703 ~ 18975524 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other downstream 1435298 18545571 ~ 18672893 (-)
LOC122356211 gng4 other upstream 123768 20264726 ~ 20275386 (-)
G95520 NA other upstream 338967 20479925 ~ 20486704 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other upstream 347827 20488785 ~ 20492076 (-)
G95511 NA other upstream 352684 20493642 ~ 20496864 (-)
G95526 NA other upstream 429080 20570038 ~ 20571562 (-)

Expression


Co-expression Network