tmem254 (LOC107689576,LOC107653189,LOC107742085,LOC107711410)


Basic Information

Item Value
gene id tmem254
gene name LOC107689576,LOC107653189,LOC107742085,LOC107711410
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22151742 ~ 22156859 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU141794
AGAGATCTCTATAGCGACAGCCCGGCCGCCGAGAGGAGACTAGTGTAGTTAACTCTAGTTAGTTTGCTGTTTAGTTAGATTAGCCATCATGGCCAAAAGTGACGGCAGCTCGTACTTCAGGAGGTCCAGTGTGTTCTGGATGCTGGTCGTGGCGGGTTCTCTGAGCTTTTTCACGTGGACGGTGTTCTGGCCTCAGGACGTCCCCTACAGCAGTCTGGGTCCCCTCGGAGCTCTGGCCAAGCATTGTGTGGACTATCACTATCCTGTGATGTATTACGGATGGTTTCTGACGTGGCTCATCCATCTCTTCGAGGCTCTCTTTGCGCTGAAGATCTGCAGtGATAAAGGCATAGACAGCACCTCCACACGTTTCCTGTGGGTCGCTCAGACGTTCCTGTTTGGTTTCGCGTCTCTGGGTCTTCTGCTCAAATACAAACCGGGCGGCCGATCCAAACGCGAGTGACAGAAAGCGCAGCCTGACGCCGATCCCCCGCAGGACGCTGATCTTTATATTCCAGAGGATTTATCCACCAGCAGGTTATATTTGAACAGTCTCATCCACCTCACTGATTCGTTAAAGGCTAAATGTCACCCGAGGCCTGGTTTACACGATCCTGGTTCAGTGAAGCTCTATCAGCAGTATTAGTGACGTAACGTCTGTCAGAAAGTCACTTCAGCGCCGTGTGGGTACAGTCAGACTCTTACAGCGCAAAATAAGAGCAATAAACCTCTAATACACACTGGTATACAAATCCAGGAAACATGGTACACTTCACAGAGACATGGAGAAGAAGGTATTCATCTAAAGATTTGCTGATATAAACCAAACCTCCCGCTGTACAACAGAATCAGAGTCCTccatataaatgataatatttacttaaagtgctttaaaactattttcactcagaaactgcatAGATTAAACggctagaatttttttttgtatgaattgtaaacacattcatatttttcatacaGATAATTGTATCCAAAATTGAAAAGCATTATATTTTGAGAAACCTCGTCTCTATAATTGGTCTTTTGCATTAATAGTGTAACGGTGAGTAGATATATCTTATAATTGTGGGTACAATTATTCAAGAGgtcataaaatgcataattaatgcattcataattaatgtattataatatgcagtaatattttgtatcaaaaggttttaaataacGGTACTTTGTcctaaattgaaaataaaaataaaacaatacatttataaatttataaaaacaataaaaaataaatttttcactgtatgttttgctgtaataaaataatgaaattatattaaaattaaaatgagtcaAGCTTAGGCCCTGTGTCGAGAACAACTGagatacacttttattttttagtgaCTTACGAATGAGGAAGAATCAAAATCAAGAAAAGAGCCAGAACGAGTCTGCTTGGCCTAACTAGAACACGTTACTCCACGCATCTGGGTTTCTCATTATATAATAGAATAGAGAAAGCGTCTTACAGTCTGCTCCGTTCGTAGACGGTTCACAGCTCAAATATGAAGGATCTTTATACCAGGCCGCCGCTGGACGTGATGTTCCTCAGACGCTGCTGATGGAGCAGACACCTGAACGCAGAGTATTCCTCTGACCGTCTCTCTCAGCCGCTGCTGCTTCAGAAACACTTGTGTAAGTGCAGCTGGTTATTTTTAGTACAGCAGAGCGTTAGATTCCTCCAGACTTCTGTGTTTTGGCTGGAGTTCGTGTGATTATGacgtgtgtgtttagtgtgaaCGAAGGAAAATAAACCGCCTGATTTGACTTGCTTTGTGTCGTCTGTCACTCGATATACAATCATATCATAAAATACTGTCATACGGATATGAAGCTTCGTTTGTAGTTTTGACAGGAGCTCAGCGCTGGTTAGGATGCGGATGAATGAATCTGATTCGCTCTTCACACTGGATTCAATCACATGTGCTTTATTTAGAGCTGTGGTGTCCGACGTACTCATAATTCATACGGAGAGACATTTTTATGTTAGCATATTTATTGGACAATAATTacgcaatttattttatttgataaaaccAACAACATTACAGCAGAGCACT
>TU141795
CTCTTATTTTGTGTGGTCGGTCACTTCCGGTGCTGAGAGATCTCTATAGCGACAGCCCGGCCGCCGAGAGGAGACTAGTGTAGTTAACTCTAGTTAGTTTGCTGTTTAGTTAGATTAGCCATCATGGCCAAAAGTGACGGCAGCTCGTACTTCAGGAGGTCCAGTGTGTTCTGGATGCTGGTCGTGGCGGGTTCTCTGAGCTTTTTCACGTGGACGGTGTTCTGGCCTCAGGACGTCCCCTACAGCAGTCTGGGTCCCCTCGGAGCTCTGGCCAAGCATTGTGTGGACTATCACTATCCTGTGATGTATTACGGATGGTTTCTGACGTGGCTCATCCATCTCTTCGAGGCTCTCTTTGCGCTGAAGATCTGCAGtGATAAAGGCATAGACAGCACCTCCACACGTTTCCTGTGGGTCGCTCAGACGTTCCTGTTTGGTTTCGCGTCTCTGGGTCTTCTGCTCAAATACAAACCGGGCGGCCGATCCAAACGCGAGTGACAGAAAGCGCAGCCTGACGCCGATCCCCCGCAGGACGCTGATCTTTATATTCCAGAGGATTTATCCACCAGCAGGTTATATTTGAACAGTCTCATCCACCTCACTGATTCGTTAAAGGCTAAATGTCACCCGAGGCCTGGTTTACACGATCCTGGTTCAGTGAAGCTCTATCAGCAGTATTAGTGACGTAACGTCTGTCAGAAAGTCACTTCAGCGCCGTGTGGGTACAGTCAGACTCTTACAGCGCAAAATAAGAGCAATAAACCTCTAATACACACTGGTATACAAATCCAGGAAACATGGTACACTTCACAGAGACATGGAGAAGAAGGTATTCATCTAAAGATTTGCTGATATAAACCAAACCTCCCGCTGTACAACAGAATCAGAGTCCTccatataaatgataatatttacttaaagtgctttaaaactattttcactcagaaactgcatAGATTAAACggctagaatttttttttgtatgaattgtaaacacattcatatttttcatacaGATAATTGTATCCAAAATTGAAAAGCATTATATTTTGAGAAACCTCGTCTCTATAATTGGTCTTTTGCATTAATAGTGTAACGGTGAGTAGATATATCTTATAATTGTGGGTACAATTATTCAAGAGgtcataaaatgcataattaatgcattcataattaatgtattataatatgcagtaatattttgtatcaaaaggttttaaataacGGTACTTTGTcctaaattgaaaataaaaataaaacaatacatttataaatttataaaaacaataaaaaataaatttttcactgtatgttttgctgtaataaaataatgaaattatattaaaattaaaatgagtcaAGCTTAGGCCCTGTGTCGAGAACAACTGagatacacttttattttttagtgaCTTACGAATGAGGAAGAATCAAAATCAAGAAAAGAGCCAGAACGAGTCTGCTTGGCCTAACTAGAACACGTTACTCCACGCATCTGGGTTTCTCATTATATAATAGAATAGAGAAAGCGTCTTACAGTCTGCTCCGTTCGTAGACGGTTCACAGCTCAAATATGAAGGATCTTTATACCAGGCCGCCGCTGGACGTGATGTTCCTCAGACGCTGCTGATGGAGCAGACACCTGAACGCAGAGTATTCCTCTGACCGTCTCTCTCAGCCGCTGCTGCTTCAGAAACACTTGTGTAAGTGCAGCTGGTTATTTTTAGTACAGCAGAGCGTTAGATTCCTCCAGACTTCTGTGTTTTGGCTGGAGTTCGTGTGATTATGacgtgtgtgtttagtgtgaaCGAAGGAAAATAAACCGCCTGATTTGACTTGCTTTGTGTCGTCTGTCACTCGATATACAATCATATCATAAAATACTGTCATACGGATATGAAGCTTCGTTTGTAGTTTTGACAGGAGCTCAGCGCTGGTTAGGATGCGGATGAATGAATCTGATTCGCTCTTCACACTGGATTCAATCACATGTGCTTTATTTAGAGCTGTGGTGTCCGACGTACTCATAATTCATACGGAGAGACATTTTTATGTTAGCATATTTATTGGACAATAATTacgcaatttattttatttgataaaaccAACAACATTACAGCAGAGCACT
>XM_043256219.1
GTCGGTCACTTCCGGTGCTGAGAGATCTCTATAGCGACAGCCCGGCCGCCGAGAGGAGACTAGTGTAGTTAACTCTAGTTAGTTTGCTGTTTAGTTAGATTAGCCATCATGGCCAAAAGTGACGGCAGCTCGTACTTCAGGAGGTCCAGTGTGTTCTGGATGCTGGTCGTGGCGGGTTCTCTGAGCTTTTTCACGTGGACGGTGTTCTGGCCTCAGGACGTCCCCTACAGCAGTCTGGGTCCCCTCGGAGCTCTGGCCAAGCATTGTGTGGACTATCACTATCCTGTGATGTATTACGGATGGTTTCTGACGTGGCTCATCCATCTCTTCGAGGCTCTCTTTGCGCTGAAGATCTGCAGtGATAAAGGCATAGACAGCACCTCCACACGTTTCCTGTGGGTCGCTCAGACGTTCCTGTTTGGTTTCGCGTCTCTGGGTCTTCTGCTCAAATACAAACCGGGCGGCCGATCCAAACGCGAGTGACAGAAAGCGCAGCCTGACGCCGATCCCCCGCAGGACGCTGATCTTTATATTCCAGAGGATTTATCCACCAGCAGGTTATATTTGAACAGTCTCATCCACCTCACTGATTCGTTAAAGGCTAAATGTCACCCGAGGCCTGGTTTACACGATCCTGGTTCAGTGAAGCTCTATCAGCAGTATTAGTGACGTAACGTCTGTCAGAAAGTCACTTCAGCGCCGTGTGGGTACAGTCAGACTCTTACAGCGCAAAATAAGAGCAATAAACCTCTAATACACACTGGTATACAAATCCAGGAAACATGGTACACTTCACAGAGACATGGAGAAGAAGGTATTCATCTAAAGATTTGCTGATATAAACCAAACCTCCCGCTGTACAACAGAATCAGAGTCCTccatataaatgataatatttacttaaagtgctttaaaactattttcactcagaaactgcatAGATTAAACggctagaatttttttttgtatgaattgtaaacacattcatatttttcatacaGATAATTGTATCCAAAATTGAAAAGCATTATATTTTGAGAAACCTCGTCTCTATAATTGGTCTTTTGCATTAATAGTGTAACGGTGAGTAGATATATCTTATAATTGTGGGTACAATTATTCAAGAGgtcataaaatgcataattaatgcattcataattaatgtattataatatgcagtaatattttgtatcaaaaggttttaaataacGGTACTTTGTcctaaattgaaaataaaaataaaacaatacatttataaatttataaaaacaataaaaaataaatttttcactgtatgttttgctgtaataaaataatgaaattatattaaaattaaaatgagtcaAGCTTAGGCCCTGTGTCGAGAACAACTGagatacacttttattttttagtgaCTTACGAATGAGGAAGAATCAAAATCAAGAAAAGAGCCAGAACGAGTCTGCTTGGCCTAACTAGAACACGTTACTCCACGCATCTGGGTTTCTCATTATATAATAGAATAGAGAAAGCGTCTTACAGTCTGCTCCGTTCGTAGACGGTTCACAGCTCAAATATGAAGGATCTTTATACCAGGCCGCCGCTGGACGTGATGTTCCTCAGACGCTGCTGATGGAGCAGACACCTGAACGCAGAGTATTCCTCTGACCGTCTCTCTCAGCCGCTGCTGCTTCAGAAACACTTGTGTAAGTGCAGCTGGTTATTTTTAGTACAGCAGAGCGTTAGATTCCTCCAGACTTCTGTGTTTTGGCTGGAGTTCGTGTGATTATGacgtgtgtgtttagtgtgaaCGAAGGAAAATAAACCGCCTGATTTGA

Function

NR:

description
transmembrane protein 254

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141794 False 2093 TUCP 0.41 4 22151742 22156824
TU141795 True 2128 TUCP 0.41 4 22151742 22156859
XM_043256219.1 False 1820 mRNA 0.41 4 22152035 22156844

Neighbor

gene id symbol gene type direction distance location
pwwp2b pwwp2b,LOC107670800,LOC107754010,LOC107744923,LOC107653191 coding downstream 100056 22041455 ~ 22051686 (-)
LOC122356328 inpp5a,LOC107744939 coding downstream 127132 21908358 ~ 22024610 (-)
valopa valopa,LOC107689369,LOC107688178,LOC107754013,LOC107745034 coding downstream 284844 21847430 ~ 21866898 (-)
trnag-gcc_71 NA coding downstream 577421 21574251 ~ 21574321 (-)
trnag-gcc_70 NA coding downstream 737871 21413800 ~ 21413871 (-)
srfb LOC107689574,LOC107570739 coding upstream 806 22157665 ~ 22183174 (-)
ptk7b LOC107672339,LOC107577581,LOC107742082 coding upstream 28181 22185040 ~ 22227004 (-)
zmp:0000000755 LOC107672344,LOC107742077,LOC103371009 coding upstream 97320 22254179 ~ 22283646 (-)
slc30a10 slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031 coding upstream 160381 22317240 ~ 22323509 (-)
LOC122356263 ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641 coding upstream 328430 22485289 ~ 22489323 (-)
G95922 NA non-coding downstream 15351 22135936 ~ 22136391 (-)
G95902 NA non-coding downstream 31300 22114696 ~ 22120442 (-)
G95903 NA non-coding downstream 111636 22039782 ~ 22040106 (-)
G95899 NA non-coding downstream 276813 21874513 ~ 21874929 (-)
trnag-gcc_72 NA non-coding downstream 498061 21653612 ~ 21653681 (-)
G95934 NA non-coding upstream 17467 22174326 ~ 22244477 (-)
G95933 NA non-coding upstream 71325 22228184 ~ 22230539 (-)
G95938 LOC107711401,LOC107568028,LOC107683865 non-coding upstream 91197 22248056 ~ 22370625 (-)
G95941 NA non-coding upstream 146446 22303305 ~ 22303781 (-)
G95949 lclat1,LOC107568033,LOC107742083,LOC107601640 non-coding upstream 156797 22313656 ~ 22483219 (-)
LOC122357128 NA other downstream 7772 22137388 ~ 22143970 (-)
G95646 adgra1,LOC107750141,LOC107567015,LOC107663568,LOC106903219,LOC107720869 other downstream 971525 21007472 ~ 21180217 (-)
G95526 NA other downstream 1580180 20570038 ~ 20571562 (-)
G95511 NA other downstream 1654878 20493642 ~ 20496864 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other downstream 1659666 20488785 ~ 20492076 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 74590 22231449 ~ 22250313 (-)
G95932 NA other upstream 79245 22236104 ~ 22238570 (-)
G95936 lbh other upstream 139482 22296341 ~ 22297227 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other upstream 169846 22326705 ~ 22329292 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other upstream 214708 22371567 ~ 22448011 (-)

Expression


Co-expression Network