Gene
RNA
| Item | Value |
|---|---|
| gene id | fgf8a |
| gene name | fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 |
| gene type | misc |
| species | tiger barb (Puntius tetrazona) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_056711.1 |
| NCBI id | CM032080.1 |
| chromosome length | 25085836 |
| location | 24399123 ~ 24404715 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| symbol | description |
|---|---|
| fgf8a | Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Involved in positive regulation of somitomeric trunk muscle development. Acts upstream of or within several processes, including animal organ development; determination of bilateral symmetry; and nervous system development. Located in extracellular space and lysosome. Is expressed in several structures, including germ ring; head; mesoderm; nervous system; and neural keel. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 6 with or without anosmia and prostate carcinoma in situ. Orthologous to human FGF8 (fibroblast growth factor 8). |
| description |
|---|
| PREDICTED: fibroblast growth factor 8-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0021555 | midbrain-hindbrain boundary morphogenesis | biological_process |
| GO:0046850 | regulation of bone remodeling | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0021571 | rhombomere 5 development | biological_process |
| GO:0021572 | rhombomere 6 development | biological_process |
| GO:0021588 | cerebellum formation | biological_process |
| GO:0055011 | atrial cardiac muscle cell differentiation | biological_process |
| GO:0055012 | ventricular cardiac muscle cell differentiation | biological_process |
| GO:0030177 | positive regulation of Wnt signaling pathway | biological_process |
| GO:0061195 | taste bud formation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0043049 | otic placode formation | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0048263 | determination of dorsal identity | biological_process |
| GO:0003208 | cardiac ventricle morphogenesis | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0031076 | embryonic camera-type eye development | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0048339 | paraxial mesoderm development | biological_process |
| GO:0021703 | locus ceruleus development | biological_process |
| GO:0048665 | neuron fate specification | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0010002 | cardioblast differentiation | biological_process |
| GO:0030878 | thyroid gland development | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0030901 | midbrain development | biological_process |
| GO:0060037 | pharyngeal system development | biological_process |
| GO:0030903 | notochord development | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0048705 | skeletal system morphogenesis | biological_process |
| GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
| GO:0048709 | oligodendrocyte differentiation | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005104 | fibroblast growth factor receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| K04358 | FGF; fibroblast growth factor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU142467 | False | 1710 | TUCP | 0.41 | 3 | 24399123 | 24403644 |
| XM_043254715.1 | True | 2008 | mRNA | 0.43 | 5 | 24399126 | 24404715 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fbxw4 | fbxw4,LOC107707737,LOC107716323,LOC107673945,LOC107694796,LOC107588663,LOC107585327 | coding | downstream | 5236 | 24367927 ~ 24393887 (-) |
| wbp1la | LOC107694985,LOC107716324,LOC107585326,LOC107673922,LOC107588740,LOC107708389 | coding | downstream | 37827 | 24350847 ~ 24361296 (-) |
| cnnm2a | cnnm2a,LOC107716327,LOC107588659,LOC107673921,LOC107585325 | coding | downstream | 57671 | 24327865 ~ 24341452 (-) |
| inaa | inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 | coding | downstream | 85177 | 24311027 ~ 24313946 (-) |
| LOC122356174 | polr1c | coding | downstream | 96708 | 24298935 ~ 24302415 (-) |
| slc2a15a | slc2a15a,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370,LOC107588743,LOC108442702 | coding | upstream | 25305 | 24430020 ~ 24441333 (-) |
| b3gat2 | b3gat2,LOC107718837,LOC107694338,LOC107673925,LOC107588666,LOC107585329,LOC107716319 | coding | upstream | 198973 | 24603688 ~ 24620433 (-) |
| asrgl1 | asrgl1,LOC107695955,LOC107585330,LOC107673965,LOC105911569,LOC103032358,LOC108442615 | coding | upstream | 262590 | 24667305 ~ 24672334 (-) |
| cgasa | NA | coding | upstream | 437555 | 24842270 ~ 24845635 (-) |
| eef1a1a | eef1a1a,LOC107693767,LOC107716315,LOC107588677,LOC107718831,LOC107673933,LOC108258313,LOC107585334 | coding | upstream | 441734 | 24846449 ~ 24851300 (-) |
| G96329 | NA | non-coding | downstream | 116506 | 24274695 ~ 24282617 (-) |
| G96303 | NA | non-coding | downstream | 134206 | 24264668 ~ 24264917 (-) |
| G96301 | NA | non-coding | downstream | 148368 | 24250433 ~ 24250755 (-) |
| G96295 | NA | non-coding | downstream | 291305 | 24107433 ~ 24107818 (-) |
| G96286 | NA | non-coding | downstream | 328635 | 24070160 ~ 24070488 (-) |
| G96411 | NA | non-coding | upstream | 201415 | 24606130 ~ 24606376 (-) |
| G96415 | NA | non-coding | upstream | 225838 | 24630553 ~ 24675946 (-) |
| LOC122357044 | NA | non-coding | upstream | 248212 | 24652927 ~ 24664925 (-) |
| G96435 | rims1,LOC107588670,LOC107718836 | non-coding | upstream | 306029 | 24710744 ~ 24713458 (-) |
| G96436 | NA | non-coding | upstream | 309504 | 24714219 ~ 24716962 (-) |
| borcs7 | borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 | other | downstream | 54466 | 24342749 ~ 24344657 (-) |
| si:ch211-130h14.4 | LOC107660236 | other | downstream | 955060 | 23429646 ~ 23444063 (-) |
| G96053 | NA | other | downstream | 1403524 | 22994037 ~ 22995599 (-) |
| G96036 | mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 | other | downstream | 1575864 | 22821981 ~ 22823259 (-) |
| LOC122356262 | stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 | other | downstream | 1951112 | 22371567 ~ 22448011 (-) |
