LOC122356067 (ppp2r5d,LOC107559765,LOC107696374,LOC106605890)


Basic Information

Item Value
gene id LOC122356067
gene name ppp2r5d,LOC107559765,LOC107696374,LOC106605890
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3022616 ~ 3050667 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254519.1
GCTGGTGAAGGGAGGGCGAGGTAACAGTGAGAGCGAGAGCCTGAGTGCAAGGGAAGGCTTCTCACGGAGGCACGGCTAAAGACAACATTTGCAAAATGccgaataaaactaaaaaagagaAGGAACCGACCAAATCTGCAAAAAGCAGCACGAAAAACAGCAATGCCGGTGGCGGAAAGGATGCTGGGACTGAAAATTCAGAAGAGGCCCAGCAGACAGCCAGTAAGCGTCCGAGCAACAGCACTCCACCTCCCACTCAACTCAACAAAATTAAGTACTCAGGTGGGCCTCAGATTGTAAAGAAGGAGCGTCGACAGAGTTCGTCACGATTCAACCTCAGCAAGAACCGCGAACTGCAGAAGCTTCCCGCCCTCAAAGATGCCCCACCCATTGATCGAGAAGAACTGTTTGTCCAGAAACTACGGCAGTGCTGTGTGCTTTTCGACTTTGTGACCGATCCACTAAGCGATCTCAAGTACAAAGAGGTGAAGCGAGCCGGCCTCAATGAAATGGTGGAGTACATCACACACAACCGCGACGTGGTCACAGAGTCCATCTACCCTGAAGCTGTCATCATGTTTTCTGTGAACTTGTTCAGGACTCTGCCGCCCTCTTCCAACCCCACGGGAGCCGAGTTTGACCCAGAGGAGGACGAACCCACTCTAGAGGCAGCTTGGCCTCACCTGCAGCTGGTGTATGAATTCTTCTTAAGATTCCTGGAGTCACCCGACTTCCAGCCCAACATTGCCAAAAAATACATCGACCAAAAGTTTGTACTCTCGCTTCTGGAGCTTTTCGACAGCGAAGACCCCCGAGAGCGGGACTTCCTGAAAACCATCCTGCACCGCATCTACGGAAAGTTCCTGGGCCTGAGAGCCTACATTCGCCGGCAGATCAACAATATATTCTACAGGTTTATATACGAGACGGAGCATCACAATGGGATTGCAGAGCTTTTAGAAATCTTAGGAAGCATAATTAATGGCTTTGCCCTGCCACTGAAAGAGGAGCACAAAATGTTCCTCATCAGAGTGCTACTGCCTTTACACAAAGTCAAGTCTCTCAGCGTCTATCACCCACAGCTGGCCTACTGTGTGGTGCAGTTTTTGGAAAAGGACAGCAGCCTCACTGAACCTGTGATTATGGGCCTGCTAAAGTTCTGGCCCAAGACCCACAGTCCTAAGGAAGTGATGTTTCTGAATGAGCTGGAGGAAATCTTGGATGTCATCGAGCCCTCAGAATTTGTTAAAGTCATGGAGCCTCTCTTTAGACAGCTGGCCAAGTGTGTATCGAGTCCGCACTTCCAGGTTGCTGAAAGAGCATTGTATTACTGGAACAATGAGTACATCATGAGCCTGATCAGTGACAATGCCGCTAAGATCCTTCCCATCATGTTTCCCGCTCTCTACAAGAACTCCAAGAGCCACTGGAACAAGACAATCCACGGGCTTATCTACAATGCTCTGAAGCTCTTTATGGAGATGAACCAGAAGCTGTTTGATGACTGCACTCAGCAGTACAAAGCCGAGAAGCAGAAAGAGAAGTACAAACTAAAGGAGCGGGAAGAAATGTGGCATAAAATTGAGGAGCTGGCAAAACAGAACCCTCAGAGTACAAAGATTCAGCTGCGGCCCGGTCTGGCCCAAGAAGAGTATATGATGTATAACGAAGGAGGGATGCCCCTGTACTCGATGGAGACGGAGACCCCTACAGTCGAGGACATCCAGCTGCTGAAGAAGACCGTGGAATCAGAAGCTTCACAGGGATTGAAAGAAATCAAGAAAGACAAGGTTTTGATGAGGCGAAAGTCTGAGCTGCCGCAGGACGTGTATACTATAAAAGCCCTGGAAGCTCAGCGAGCGGAGGAGTACCTGACGGCCAACCAGGAAGCCCTCTGACCGGGGAGCACCGCCATCCTCCACCGCGCCTAAACTGTTCCTCTCGTCTTGGTCCAAACTCGTCGCCTGCTGTAACCCACCTCTCAATCCCTCTGCCTCTGTCCATACTCTCTTCCTCCCTCGCTGTTGGAGAGCCCCGTCTGCAAACATCCAGCCCGCAGAGCAGTGGAGAGCTCCCATGTGCGCACAAGCACTTCCTCACAGATCCATAGCTGCTGATCCTCGCATCCAACAGAAGCTGTTAGAAAGCAGTGTGGGTTACAAATAATCAAAGTATGCTTTTTGTGGTCTGTTTTTCTCTCCACACTCCGCTTTGTTTTGCCCACTTTATGCTGTCTCCATTCGTCCGCATGTTCCCTATCCCCTTTTATTTTTACCACTGCTTGAGAGCTTCTCCTGTATTCCAATCACTGCCTCTGTAAAAACCTGTTTGCAACGAAGGAGCCACGATTAACTAAACGAATCGCGTTACTCGAGATAAACGAAGACCTCAATGCAGACGGTGTGTTGGATTTTCCCGTGGGTTCAGCGTAGAGCCAAATGAAGCGGTCAGGGCTGTTCTTGATGTCAAACTTACACGGAGAAACTTGTTCCTTAGTAAGAAGCTTTATGAATTAGACACGCAAATTGGAGATTTGCTAATCAATTTCAGACGCTTTGCTAGGTATACACATGAAAGTGTTTCTCCATAGTGGCCTGGTGCTGTAAATGCTTCAGGTAGTCGTCTGAAGAAGTCATTTTTGAGGTCATGGCCACGTATTAAGAGCCAGAGACTGAAGAGTTCCCGAATCCGTTTGCTGTTTTCCTAGTGACCGTGTTAATGATTGtcaagaacaaacaaacaaacaaaaaaaaaaaaggggagaTTTGTGTAAGCAATCATCTCTATATACACCACCAGCAGAGCGCTTGAtgaaaatgctgtaaaagtagTAGCGGAAAAGACGATGTGCTCGATGTGCAGCAACGGCCTTTCGGTCCAAACCGTCTTTTCGTTTTAAGATACCTCTTTAACAGAACGAAATGTGTTTTTTCGCCACCTAGCTTCGGTAAGGTGTCTTGTTTTTTGCTTCGTAGGTTTCTGTGACGTATGAGAGCCAGAAAAGAACGAATCCGCCAAGCCTTTAAAAAAGGAGACCGTTCGAGATCGAGAACTACAGTCCTGTCCGAAATTGTACGTCATATTttgaccgtttttttttttttttttttcggcttCAAAGCGCCtaagcagtatttttttttcaggaattaaGAGTCGTCCGGAGAACGTGCACTGGTCTAGTGTACGATCAAGCGCTATACAATCCTCCTGATAGGACTATATACTTAAAGAGAAAAGATACTCGCTTTCCTGTCTAGGCTTAATATATGGAAAACCGACAGCCTGCAGTTGCCGTCGCAAATacgtgtgtactgtatattgtcATGTAAATTGCTTATGATTGCGCCCTAGCCCCGCCCACCCCCCACCCTCACCCTTCAGTACTCCCTCTTCCTGAGttcatcttttctttcattctgtttGCTTGTACGACTCCATTCTGATGCATGATGTCCCCTCTCTGTTGTAAAGATCTGTCTCGTGAAGTGTCACTTTGATCATTCCAATAGCGAGGGAACATTTACTCCTCCTACAGGCTGCTGGACAACGCAAAACGTCATCGCTATCCGACGCACAGCCCAAAAAAGGCCTCGCTGTAATTCATCCACTCGCCGCGCATTCAAGCTGCTACACTTCTCCCATCGCTCCAAACGCGCATACGTTTAGATTCGTGCCGTCACAGCCTGTTTAGTACGCGGCGCAGAGGTGAAGCCTTGAAATCATTCGATGTTTGAAGTGTTGTAATGTCACCTCGGGCCTACCGGCGTACGGGAATGACTCGTCCGCGCAATCAAGAGCATGAATTGCCAACCTTGTTGCCTCTAAACAATAGACCAAAACATTCCAGAAACAATCAGAGGCAACTTCACTCTTGAACGCAGCATGCTTCCTTTCTAAATGCCTTTTGACAGGCGGATGGGGCCGGTGTTCAGCTTGTCCGGCAGCAACAAGAACCCGAGGGAAACTAAGAAAGTATGGGTCTCTCCACACTCACCCGTCCCTTTTCCTCCTCCCCCAGTCCTCCTTCCCAAGTCTGACACTAATCTTAAGCTGCTTTCCAGGTCATATGTACATATGTTGTACTTTAATTAGGTTGAGCATTACATAGTATGAAAGTCATATTTTGTACAGATGTTCATGTATgtacagaacaaaaataaagaaacacaaaaga

Function

symbol description
ppp2r5d Predicted to enable protein phosphatase activator activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 35. Orthologous to human PPP2R5D (protein phosphatase 2 regulatory subunit B'delta).

NR:

description
serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254519.1 True 4177 mRNA 0.48 19 3022616 3050667

Neighbor

gene id symbol gene type direction distance location
LOC122356304 LOC107739478,LOC107564218,LOC107728064,LOC107655626,LOC107559768 coding upstream 43367 2971146 ~ 2979249 (+)
LOC122356776 LOC107564218,LOC107739478,LOC107706823 coding upstream 51469 2957658 ~ 2971147 (+)
LOC122357122 cul9,LOC107655624,LOC107669557 coding upstream 70854 2916892 ~ 2951762 (+)
LOC122356236 apmap,LOC107702698,LOC107564208,LOC107717839,LOC107559784 coding upstream 161949 2852563 ~ 2860667 (+)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107754752,LOC107702697 coding upstream 176356 2839850 ~ 2846260 (+)
LOC122356783 LOC107655626,LOC107728064,LOC107564218,LOC107739478,LOC107706823 coding downstream 159125 3209792 ~ 3227749 (+)
LOC122356787 LOC107739478,LOC107564218 coding downstream 178446 3229113 ~ 3231423 (+)
znf318 znf318,LOC107739464,LOC107564219,LOC107728066 coding downstream 184376 3235043 ~ 3246109 (+)
tjap1 tjap1,LOC107728071,LOC107559778 coding downstream 269762 3320429 ~ 3398358 (+)
ncoa4 LOC107739471,LOC107669570,LOC107696383,LOC107728073 coding downstream 366867 3417534 ~ 3426736 (+)
LOC122356074 NA non-coding upstream 1725 3020068 ~ 3020891 (+)
G90339 NA non-coding upstream 5396 3016794 ~ 3017220 (+)
LOC122356240 NA non-coding upstream 140930 2865807 ~ 2881686 (+)
G90292 NA non-coding upstream 393009 2629192 ~ 2629607 (+)
G90290 NA non-coding upstream 397333 2624938 ~ 2625283 (+)
G90326 cul9,LOC107736443,LOC107564217,LOC107669557,LOC107683065 non-coding downstream 149180 3199847 ~ 3201487 (+)
LOC122356226 NA non-coding downstream 195596 3246263 ~ 3247132 (+)
G90365 NA non-coding downstream 264996 3315663 ~ 3315908 (+)
G90373 lrrc73,LOC107696385,LOC107728077,LOC107739469 non-coding downstream 351297 3401964 ~ 3403754 (+)
G90378 NA non-coding downstream 399506 3450173 ~ 3450485 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other upstream 11975 2982559 ~ 3010641 (+)
G90230 NA other upstream 552235 2469945 ~ 2470381 (+)
LOC122356772 pim3,LOC107732271 other upstream 737809 2264746 ~ 2284807 (+)
cutc cutc other upstream 841787 2176009 ~ 2180829 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other upstream 856588 2153422 ~ 2166028 (+)
LOC122356070 dnph1 other downstream 1315 3051982 ~ 3278260 (+)
G90350 dlk2,LOC107696386,LOC107669558,LOC107559779,LOC107728069 other downstream 124068 3174735 ~ 3285406 (+)
G90349 NA other downstream 128760 3179427 ~ 3179933 (+)
G90324 cul9,LOC107564217,LOC107669557,LOC107559769,LOC107655624,LOC107706827 other downstream 137159 3187826 ~ 3192113 (+)
LOC122356782 NA other downstream 156744 3207411 ~ 3209753 (+)

Expression


Co-expression Network