si:ch211-10a23.2 (si:ch211-10a23.2,LOC107654931,LOC107724523,LOC107675536,LOC107588580,LOC107585488)


Basic Information

Item Value
gene id si:ch211-10a23.2
gene name si:ch211-10a23.2,LOC107654931,LOC107724523,LOC107675536,LOC107588580,LOC107585488
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12324044 ~ 12327519 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254532.1
ATGAATGACAGTAAAGCACTATTCCTGCAGGAGGAGCACTATGTTGGGGAGATCAAAGGGGGTCTACGGCCGACCATGAGGCTGGTAGTGATGGGTATTGTTCACAAGCAGCCCAAAAGTATGGTAGTGGTAGTGGCATGCCAGTCTAAAGGAGAAGGGGATGAGGAAATCGAGGGTGATGTGGGACTGGAATTGAAAGTGAACTTTTCAGAAAAGGCTGTGCTTCGTAACGCTCGTCTATCAGGAAAGTGGGGAGCTTCAGAAACTGCCCTGTCTTTCTTCCCCTTTGCTCCAGGAGAAGCCTTTAAGatGGAGATTGTGTGCGAGCACCAGCAGTTCCGTATTCTGGTGGATGGGCAGCCGTTGTGTGGTTTCACTCACAGACTGACTCAGCTCGCATCTCTCACTGCTCTCAGAGTCCACGGAGATCTACAGCTCACCAAAGTGGCTTGAGCAAGTGAAGAATTGTCCGCGATGGCATAGACTTTTCATAGAAGCGACTTAGCTGAGGTTTTTTAGAATCCTGAGCGTACTGTACACAATTGTCTTAAAGTTCcagaaattcatttaaaacatttagaactCATTTCAGTtgggtctgtgtttgttttggtagGCTAATTGGCCATTTTGTAAAGTTTCTccagtgatttttatttgtagtgGCAAATTAGGCTATTTAGGTTCAATGGTTTCGCATTGTTTGGACACATTTGAAGGAGAAAATCTAAAAGGAGCTGCGTTACCTCATGTGCAACCAGCTTTAATCAATTCAGATAACATAAAATTCTAACTATGAATGATTTTCCATAAATTAGCTCAGATATAAGATTTCCTtcatatagtttttataatacataatgcTCTACTTAacgtttttgtttggttttgattaGATATTTAGTTTCTTTGGCTCTTTGATACAGAAGCAAAAGTGCCTTCATTTGTTCCATTAGATGCACTTATACTCAGTAGAGGACTTTTGGTGTGCTTGTAACAGTAATTGTTGTAGTTcaaattcatttgcatttacacatttggcagatgcttttatccaaagcaacttacattGCATTCAAGGTATACATTTGATCAGTTCCTGCATTCCCTCAGACCCATAATCTTAGCGTTAATAGCGACATTATCTAGTTTTAGCTACAGGAATGAAAAATTAGAACAGAATAATTCAGGATCGtaagtgaaacattttttttgtttatccttTGTTCATTTGAATGTACCGCAGAAAAGTTTTGATGGCATTAAGAACCTAAGGACTCATAACTGACACCAGAATGttcactttaaaatgcaattcccTGCGATTGTATTGGTTTGAAGAAAAAGGACTCAAAGTCCATCTGAAGCCTGTACTTGGTGCTGTCAATCTACACACGTAATGCTGCAAAAGAAGCATGTATTAAAAGCAAGGTTTACTTGAATGTCTTTAAACATCTAATAATTGCAATATGTACTGTAAACAGTAAACTTTTCTTAAAGAA
>XM_043254533.1
GGTTCGAGGACTCGACGCCGGTCTCGCGCACTGCGATGATCAATTCCGTACGTGACAGCTATTGTCCTCGCGCTTGAAACGCAACACCTGCAGGACTAAATTAAAGCCTTTCGCGACAGTCTAAAGAATGACGGATAAGGGGAACATCCGAAACGAGGAGCACTATGTTGGGGAGATCAAAGGGGGTCTACGGCCGACCATGAGGCTGGTAGTGATGGGTATTGTTCACAAGCAGCCCAAAAGTATGGTAGTGGTAGTGGCATGCCAGTCTAAAGGAGAAGGGGATGAGGAAATCGAGGGTGATGTGGGACTGGAATTGAAAGTGAACTTTTCAGAAAAGGCTGTGCTTCGTAACGCTCGTCTATCAGGAAAGTGGGGAGCTTCAGAAACTGCCCTGTCTTTCTTCCCCTTTGCTCCAGGAGAAGCCTTTAAGatGGAGATTGTGTGCGAGCACCAGCAGTTCCGTATTCTGGTGGATGGGCAGCCGTTGTGTGGTTTCACTCACAGACTGACTCAGCTCGCATCTCTCACTGCTCTCAGAGTCCACGGAGATCTACAGCTCACCAAAGTGGCTTGAGCAAGTGAAGAATTGTCCGCGATGGCATAGACTTTTCATAGAAGCGACTTAGCTGAGGTTTTTTAGAATCCTGAGCGTACTGTACACAATTGTCTTAAAGTTCcagaaattcatttaaaacatttagaactCATTTCAGTtgggtctgtgtttgttttggtagGCTAATTGGCCATTTTGTAAAGTTTCTccagtgatttttatttgtagtgGCAAATTAGGCTATTTAGGTTCAATGGTTTCGCATTGTTTGGACACATTTGAAGGAGAAAATCTAAAAGGAGCTGCGTTACCTCATGTGCAACCAGCTTTAATCAATTCAGATAACATAAAATTCTAACTATGAATGATTTTCCATAAATTAGCTCAGATATAAGATTTCCTtcatatagtttttataatacataatgcTCTACTTAacgtttttgtttggttttgattaGATATTTAGTTTCTTTGGCTCTTTGATACAGAAGCAAAAGTGCCTTCATTTGTTCCATTAGATGCACTTATACTCAGTAGAGGACTTTTGGTGTGCTTGTAACAGTAATTGTTGTAGTTcaaattcatttgcatttacacatttggcagatgcttttatccaaagcaacttacattGCATTCAAGGTATACATTTGATCAGTTCCTGCATTCCCTCAGACCCATAATCTTAGCGTTAATAGCGACATTATCTAGTTTTAGCTACAGGAATGAAAAATTAGAACAGAATAATTCAGGATCGtaagtgaaacattttttttgtttatccttTGTTCATTTGAATGTACCGCAGAAAAGTTTTGATGGCATTAAGAACCTAAGGACTCATAACTGACACCAGAATGttcactttaaaatgcaattcccTGCGATTGTATTGGTTTGAAGAAAAAGGACTCAAAGTCCATCTGAAGCCTGTACTTGGTGCTGTCAATCTACACACGTAATGCTGCAAAAGAAGCATGTATTAAAAGCAAGGTTTACTTGAATGTCTTTAAACATCTAATAATTGCAATATGTACTGTAAACAGTAAACTTTTCTTAAAGAA

Function

symbol description
si:ch211-10a23.2 Predicted to enable carbohydrate binding activity.

NR:

description
galectin-related protein B-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254532.1 False 1502 mRNA 0.39 3 12324507 12327519
XM_043254533.1 True 1626 mRNA 0.40 4 12324044 12327519

Neighbor

gene id symbol gene type direction distance location
rdh12 rdh12,rdh11,LOC107705384,LOC107585486,LOC107588583,LOC107724212,LOC107675518,LOC108439707 coding upstream 25319 12294205 ~ 12298725 (+)
arg2 arg2,LOC107675544 coding upstream 38999 12278556 ~ 12285045 (+)
slc66a3 pqlc3,LOC107706924,LOC107681540,LOC107675554,LOC107757120 coding upstream 140779 12180247 ~ 12183265 (+)
sobpa sobpa,LOC107706905,LOC107681548,LOC107757118,LOC107585480,LOC107588585,LOC107675556 coding upstream 151701 12144638 ~ 12172343 (+)
mtres1 LOC107706999,LOC107757125,LOC107588589,LOC107681546,LOC107675559,LOC107585479 coding upstream 219378 12101973 ~ 12104666 (+)
ndufaf1 ndufaf1,LOC107655011,LOC107705394,LOC107588570 coding downstream 64240 12391759 ~ 12395946 (+)
oip5 oip5,LOC107655012,LOC107705396,LOC107588571 coding downstream 72145 12399664 ~ 12401608 (+)
tmem39b tmem39b,LOC107675583,LOC107705392,LOC107655009,LOC107585496 coding downstream 79392 12406911 ~ 12414269 (+)
ccdc28b ccdc28b,LOC107675524,LOC107585497,LOC107705395,LOC107588714,LOC107654929 coding downstream 87349 12414868 ~ 12420469 (+)
iqcc iqcc,LOC107705368,LOC107588566,LOC107655007 coding downstream 93096 12420615 ~ 12423344 (+)
G93200 NA non-coding upstream 56978 12202742 ~ 12267066 (+)
G93190 rock2,LOC107588686,LOC107681539,LOC107707968 non-coding upstream 135006 12186068 ~ 12189038 (+)
G93191 NA non-coding upstream 139244 12180869 ~ 12184800 (+)
G93182 NA non-coding upstream 145578 12121939 ~ 12178466 (+)
G93169 LOC107588588,LOC107706947,LOC107681544,LOC107757121 non-coding upstream 216560 12104733 ~ 12107484 (+)
G93222 NA non-coding downstream 35546 12363065 ~ 12374131 (+)
G93219 NA non-coding downstream 52190 12379709 ~ 12380851 (+)
G93267 NA non-coding downstream 57788 12385307 ~ 12385618 (+)
G93280 NA non-coding downstream 120855 12448374 ~ 12450446 (+)
G93295 NA non-coding downstream 240965 12568484 ~ 12569100 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other upstream 719192 11603697 ~ 11604852 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other upstream 731444 11571660 ~ 11592600 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other upstream 910529 11389385 ~ 11413515 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 1061424 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 1105869 11213526 ~ 11218175 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 104400 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 174866 12502385 ~ 12535071 (+)
G93296 rrbp1 other downstream 244112 12571631 ~ 12575212 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other downstream 259367 12586886 ~ 12588998 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other downstream 806954 13134473 ~ 13158440 (+)

Expression


Co-expression Network