prr18 (prr18,LOC107750748,LOC107702669,LOC107717824,LOC107660240,LOC107564522)


Basic Information

Item Value
gene id prr18
gene name prr18,LOC107750748,LOC107702669,LOC107717824,LOC107660240,LOC107564522
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23444179 ~ 23446166 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254537.1
CATGCCCCGCCCCTTGTCAGTCTAGCGGCGAAATGCGGAGCGCGATGGACTACTGCGTCTAATAGCCAAAGATCCGGTGGACCGAGGCGAATGGACGTATATCTCCCGTCATTCACGAACAGATTTCTTCATTATTTCGCGCGTCGGTAGCGTTCAAAATGCCTTTTCCACCGATAAACCTGCACTCGCGGATATCGTCGCCTAGAAAGGAGCTGTTCAGGAAAAAGAAGAGCAGGGACAACGTCGCGCCTCCTCAAGCCACGTTCAGTCAAAGGACGGGAGACGACAAGGGATCGGAGAAAGATAAACTGTCCACATCGTGGCCCTCAGCCAATCTAAAGCAGCTGGGACGAAGCAAGCCGACCAGAGTCCCTCCGGATCCCGAGACGGACAGCAAACATTCATGGCTGAGCGTCCCCAAACCCTTGGCTACCTCATGCGAAAGCGTCCCGCGGTCCAGTTCTGGAGAGTCCAGCCATAAATACGCCTCGAGGACCTCTCTAGCAAAAGAAGAAGGCGAACAAGAGATCCACTTCTCCCTCAGCCTGACCCCCGAAGCCATCCTGGTCATCCAAAAGCGCAATCTGGAAAAGCAGATGATGGCCAAGCAACAGAAGTGCTGCGCTTCCGCGGACTTGAGGCACCGGCGCGTTTTCCCATCCAAGAGAGCTCAGGGCAGCTCCAGCAATAAGAGCTCCGGACCTGTTGCCAAATTGGACGGTTCCAATGACATTAGCACAATTGTGAAGATCTCCCTCCTCAACGATCAGTACAAGTATGACGACGTAGAGTACGAGGAGGAGGATGGAGACGTGGACGAGACTGTCATGAGGAAATGCAAAGAGTGGCTCAAAGGTGTGGAAAGCGCCGCTGCTTTTGGGAAAGTGGATAAACTGTCATCTCTGCCTCACCTTAAGAGCTGATATCCCAAACTAGGCCTACTTCATTTCACAACGAAAGGTCCACTGTGAAGACTCACGTTCGCGAGTTATGTGTCAAACACAAGTCACCCAATTTGCTTTTAGAAATAACGTCGTTTAAAGGGTCGTTCGCACAGAACGCGTTCTTGCGTTCTCGGACGGAGCGCGCTGTAATATAGAATACTGAGACGCCTTTGTAAAGCTGATTATTTTCAAGTGGACGTGCGCGCTTGGCGCGTGTAGAAAGAGCAGCGATTGGATAAAACGGCGCAGAACGCGTCCCGCACGCAAACACCTGAAGAGCGCGACAGTGAACTGCTTTTAACTTCTCCGCGCGACTTAAAATCTCGGCACGTTTACTCACCAGGCGCTTAAAAACAAAACGCGTCgcaatgtttacataaaatgccTGACCAAAACATAGAGGATTTAACGCGAGAAGGCGTTACGCGTGAACTTAGAATGGAACGGAACGCAGCGGCGTTCTAAAAAGATTGAATGTTTTCACGTCGACGCGCCGTTTAAACCCGAGCGCGCGAGACGCGATGCACTTCCGAACGCAAGAACGCGTCCTTCACGTACGCATACTCCGCTTTCTTAACAGACTGActggaatgtttttttccctgcgTTGAGAGGTGTTGCTGATCACTCAGTGAATTTTTTGCAGGTTACCTTTACGCGTTGACTGAGAAGCGGTGGTGTTTTTGCACATTGCTGTTGTTTTCACTTTGGTGGGCTGAACGACAGACTCGTTTGTTTCGATCTGTGGAAGTGATGCGGAGAAGAGGATGTGGACGTCGACCGGTGAAACGCATCCAGAGGACGCGGTCCTTCCTTTGTGCCAGAAAACAATAGCCGTCGAGGCGACGCTGTCTGAAAGCCTTAGAATAGACACTTAATATCTGAGAACTGTTCAAAGTTTGTGTGTAATATGGACTCGGTGACTGTTTGATCGACGAACCAGCCgtgtacagtatttattttgcaaCGTGGAGGTGTGTTTATATGCTGTGTGTTGTTCCCAAGTCATTTTTAAGGGttctgataataaaaaaagaaaagaca

Function

symbol description
prr18 Is expressed in diencephalon; hindbrain; retina; tegmentum; and telencephalon. Orthologous to human PRR18 (proline rich 18).

NR:

description
proline-rich protein 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254537.1 True 1988 mRNA 0.50 1 23444179 23446166

Neighbor

gene id symbol gene type direction distance location
tbxtb tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753 coding downstream 15115 23425032 ~ 23429064 (-)
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding downstream 27328 23332820 ~ 23416851 (-)
pla2g12b pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215 coding downstream 114246 23324782 ~ 23329933 (-)
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding downstream 205662 23183915 ~ 23238517 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding downstream 275276 23167873 ~ 23168903 (-)
sft2d1 sft2d1,LOC107660214,LOC102776618 coding upstream 1167 23447333 ~ 23464851 (-)
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677 coding upstream 19623 23465789 ~ 23505692 (-)
rnaset2 LOC107750751,LOC107702666,LOC107717820,LOC107566062,LOC107660213 coding upstream 67649 23513815 ~ 23519654 (-)
csmd1a csmd1,LOC107702659,LOC107717843,LOC106589815 coding upstream 187550 23633716 ~ 23995593 (-)
angpt2a angpt2,angpt2a coding upstream 597470 24043636 ~ 24057904 (-)
G96117 NA non-coding downstream 266083 23176802 ~ 23178096 (-)
G96108 NA non-coding downstream 289684 23152205 ~ 23154495 (-)
G96061 NA non-coding downstream 414279 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 436716 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 609767 22833829 ~ 22834412 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 92612 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 481165 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 596362 24042528 ~ 24067735 (-)
G96286 NA non-coding upstream 623994 24070160 ~ 24070488 (-)
G96295 NA non-coding upstream 661267 24107433 ~ 24107818 (-)
si:ch211-130h14.4 LOC107660236 other downstream 116 23429646 ~ 23444063 (-)
G96053 NA other downstream 448580 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 620920 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 996168 22371567 ~ 22448011 (-)
G95972 NA other downstream 1021310 22420936 ~ 22422869 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 896583 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 952957 24399123 ~ 24404715 (-)

Expression


Co-expression Network